Variovorax sp. PAMC28562: H7F36_09130
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Entry
H7F36_09130 CDS
T10649
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vax Variovorax sp. PAMC28562
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vax03016
]
H7F36_09130
Enzymes [BR:
vax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H7F36_09130
Transfer RNA biogenesis [BR:
vax03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H7F36_09130
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QNK75330
UniProt:
A0A7G8W4N7
LinkDB
All DBs
Position
complement(1913689..1915749)
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AA seq
686 aa
AA seq
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MFVLFEEAGKYLGGRVLSEAEASAQVELDTGKRLKVKSAAIVLRFEKPSPAELIAESRTL
AATMDLDLAWEFASEGEFGFTDLASDYFSDKPTLAQQGAALFALFDAPHYFRRAGKGRFK
KAPDDIVQAALAGIEKKKLVLAQIGEWAAQLVSGECPQPVREQLYKILFKPDKNASEYKA
VVDASRAAQLAPLDLLERAGAIDSPYQFHWRRFLFENFPKGTGFPALQAPAIVDDLPVAT
VEAFSIDDSQTTEIDDALSVQGIGSGTLVVGVHIAAPGLALVPGGAIDQVARNRMSTVYM
PGYKITMLPDAVVDAYTLLEGSNRPAVSLYATFDEATLELRSTETKLERVPIVANLRHDQ
LDTVVTQPWLEDASFVSSDTPEAAARLRGPLSVLFRLAKHLKAQREVVRGKPENFNRPDY
NFRLIGNDGEPQGSEQVTITTRQRGAPLDLIVSEAMILANSTWGAWLGELGVPGLYRSQA
SMAPGIKVRMGTRSLPHAGLGVKSYAWSTSPLRRYTDLVNQWQIIAAARHGKTAALAAPF
KPKDADLFSILSGFDAAYATYNGYQGGMERFWTLKYLQQQGITELTVTVVKDIQNGALVR
ADSLPLVFPVAGQQERGAHLRVKLGEIDEIALDVNGTVLERLDVVAADMEEESGEEDDEV
AGPIAIAVDMSDGEAAPEKAAENAPA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtattgtttgaagaagccggcaagtacctcggcggccgcgtactgtcggaggcc
gaagcgtcggcgcaggtcgagctcgacaccggtaagcggctcaaggtcaagagcgcggcc
atcgtgctgcgcttcgagaagccgtcgccggccgagctgatcgcggaatcgcgaacgctc
gctgccaccatggacctcgacttggcctgggaattcgcgtccgaaggcgagttcggcttc
accgacctcgcatccgattacttcagcgacaagccgacgctggcgcagcagggtgccgcg
ctgttcgcgctgttcgatgcaccgcactacttccgccgcgccggcaagggccgcttcaaa
aaagcgccggacgacatcgttcaagccgccctggccggcatcgaaaagaagaagctggtg
ctggcgcagatcggcgaatgggcggcgcagctggtgtccggcgagtgcccgcagccggtg
cgcgagcagctctacaagatcctcttcaagcccgacaagaacgcgtccgagtacaaagcg
gtggtcgacgcatcgcgtgccgcgcaactggcgccgctcgacctgctggagcgtgcaggc
gccatcgattcgccgtaccagtttcactggcgccgcttcctcttcgagaacttccccaaa
ggcacgggcttcccggcgctgcaggcaccggccatcgtcgacgacttgccggtggccacg
gtcgaagccttttcgatcgacgattcgcagacgaccgaaatcgacgatgcgctctcggtg
cagggcatcggcagtggcaccctggttgtcggcgtgcacatcgccgcccccggcctggcg
ctggtgcccggcggcgccatcgaccaggtggcgcgcaaccgcatgtcgacggtgtacatg
cccggctacaagatcacgatgctgcccgacgcggtggtcgatgcctacacgctgctcgaa
ggcagcaaccggccggccgtgtcgctctacgccaccttcgacgaagccacgctcgaattg
cgaagcaccgagaccaagctcgaacgcgttccgatcgttgccaacctgcggcacgatcaa
ctcgacacggtggtcacgcagccgtggctcgaagacgcgtcgttcgtcagctcggacacc
ccagaggctgctgcacgtttacgcggtccgttgtcggtgctgttccgcctcgcgaagcac
ctgaaagcgcagcgtgaggtggttcgtggtaagcccgagaacttcaaccgacccgactac
aacttccgcctgatcggaaacgatggcgagccgcaaggcagcgagcaggtgacgatcact
acgcggcaacgcggcgcgccgctcgacctgatcgtgtcggaagcgatgatcctggccaac
agcacctggggcgcctggctgggcgaactcggcgtgccgggcctgtaccgcagccaggcc
agcatggcgccgggcatcaaggtgcggatgggcacgcgctcgctgccgcacgccggcctg
ggcgtgaagagctatgcatggagcacctcaccactgcgccgctacaccgacctggtgaac
cagtggcagatcatcgcggcggcacgccacggcaagacagccgcgctggctgcgcccttc
aagccgaaggacgccgacttgttctcgatcctgtcgggcttcgatgccgcctatgcgacc
tacaacggctaccagggcggcatggagcgcttctggacgctcaagtatttgcagcagcaa
ggcatcaccgaactgaccgtgaccgtcgtcaaggacatccagaacggcgccctggttcgg
gccgattcgctgccgctggtgtttccggtggccggccagcaggaacgcggtgcgcacctg
cgcgtcaagctcggcgagatcgacgagatcgccctcgacgtgaacggcaccgtgctcgag
cggctcgatgtggtggcggctgacatggaagaagaatcgggcgaagaggacgacgaagtc
gccggcccgatcgccatcgcggtcgacatgagcgacggcgaggcagcaccagaaaaggca
gcggagaacgcacccgcatga
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