Variovorax sp. PAMC28562: H7F36_12870
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Entry
H7F36_12870 CDS
T10649
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7F36_12870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vax03019
]
H7F36_12870
Enzymes [BR:
vax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H7F36_12870
Messenger RNA biogenesis [BR:
vax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H7F36_12870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QNK72126
LinkDB
All DBs
Position
complement(2721538..2723379)
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AA seq
613 aa
AA seq
DB search
MNFDDLKLAPAILKAVHEHGYDTPTPIQAQAIPVVLDGHDLLGGAQTGTGKTAAFTLPML
HKLTLSASGTNKFGGTAIRALVLTPTRELAAQVEESVRTYGKYLDLESTVIFGGVGMNPQ
ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQILVLDEADRMLDMGFIHDVKKILALVP
KDKQSLLFSATFSDEIRDLAATLLKNPQSVQVTPANTTVQRITQTIHPVGRGKKKALLAH
VINEHNWSQVLVFTRTKFGANSVAEFLTKNGIQAMALHGNKSQSARTQALAGFKSGDIRA
LVATDIAARGIDIDELPHVVNFEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ
EIERFTKQQIPVKIVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTEM
LSRIRENKAGQGGERSGGGGGGNGGGGGGQRRGGGGGGGQGQGQGRNANGGGQGPRGPGG
RAPQGQGRGPQGPARAPHHAPFAPREPREAREPQGSLDERQPRHHGNSHSPTQANQVAHQ
RAESITSGVEGQPDPLRTSVDHMGAGRGRGGRSGGGGGGGGYGGNRSGGGGRSGGGGGYG
GGGGGGGGRSFGR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatgatctgaagttggctcctgccatcttgaaagctgtgcacgagcatggc
tacgacaccccgacccccatccaggcgcaagccattcccgtggtactcgacgggcacgac
ctgctcggcggtgcccagaccggcaccggcaaaacggcggccttcacgctgccgatgctg
cacaagctcaccttgagcgccagcggcaccaacaagttcggtggcaccgccatccgcgcg
ctggtgctgaccccgacgcgtgaactcgcggcccaggtcgaggagtccgttcgcacctac
ggcaagtacctcgatctcgaatcgacggtgatcttcggcggtgtcggcatgaacccgcaa
atcagcaagctgaaaaagggtgtcgacattctggtcgccacgccgggccgcctgctcgac
ctgcagcagcaaggcatgctcgacctgtcgcaagtgcagatcctggtactcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaagatcctcgcactggtgccc
aaagacaagcagagcctgctgttctcggccaccttcagcgatgaaattcgcgacctcgcc
gccacgctgctgaagaacccgcaaagtgttcaggtgacgccggccaacacgaccgtgcaa
cgcatcacgcagaccattcacccggtcggccgcggcaagaagaaggcgctgctcgcgcac
gtgatcaacgagcacaactggagccaggtgctggtgttcacccgcaccaagttcggtgcc
aacagcgtggccgagttcctgaccaagaacggcatccaggcgatggcgttgcacggcaac
aagagccagagcgcgcgcacgcaagcgctggccgggttcaagagcggtgacatccgcgcg
ctggtggcgaccgacatcgcagcacgcggcatcgacatcgacgagttgccgcacgtcgtc
aacttcgaaatcccgaacgtcagcgaagactacgtacaccgcatcggccgcactggccgt
gccggttcgagcggcgaggcagtgagcttcgtgtgcctggacgaagaaggtttcatgcag
gagatcgagcgcttcaccaagcagcagattccggtgaagatcgtcgaaggcttcggcccc
gaagaaggcgaacgcgccgagccgatcgccatgggtcgccagacgatctggggcggtgcc
ggtcgtccgccgagccgtgatgtgatgcaggctgcggccaaggccgcacgtaccgaaatg
ctcagccgtattcgcgagaacaaggccggccagggcggtgagcgctcgggcggtggtggc
ggtggaaatggcggcggtggtggcggtcaacgtcgcggcggtggcggcggcggtggccag
ggccaaggccagggccgcaatgccaacggcggtggccagggtccacgtggcccgggtggt
cgcgcaccgcaaggtcaaggtcgcggcccgcaaggcccggcacgtgcgccgcatcacgcg
ccattcgcgccgcgtgaacctcgcgaagcacgtgagccacagggctcgctcgatgagcgc
cagccgcgtcatcacggcaacagccacagcccgacccaggccaatcaggtagcgcatcag
cgcgccgagtcgatcacgagcggcgtcgagggtcaaccggatccgttgcgcacgagcgtc
gaccacatgggcgccggtcgcggacgcggcggccgatctggtggcggtggtggcggtggc
ggctacggcggcaaccgttcgggcggcggtggtcgttcgggcggcggcggaggctacggt
ggcggtggtggcggcggcggtggccgttcgttcggccgctga
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