Variovorax sp. PAMC28562: H7F36_13680
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Entry
H7F36_13680 CDS
T10649
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7F36_13680 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vax03019
]
H7F36_13680 (pnp)
03016 Transfer RNA biogenesis [BR:
vax03016
]
H7F36_13680 (pnp)
Enzymes [BR:
vax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H7F36_13680 (pnp)
Messenger RNA biogenesis [BR:
vax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H7F36_13680 (pnp)
Transfer RNA biogenesis [BR:
vax03016
]
Prokaryotic type
tRNA degradation factors
H7F36_13680 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QNK72278
LinkDB
All DBs
Position
2902555..2904855
Genome browser
AA seq
766 aa
AA seq
DB search
MSLFNKVTKSFQWGDKTVILETGEIARQAGGAVIVDIEGTVILATVVASKSAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTL
SLNPEIDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSLMDLV
VAGTEAAVLMVESEAKQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKPMWDWTAPAE
DEAFVSKVKGLAEEKLRAVYQIRSKQARTQALREANASVMASLKASGEPFDAGKVNDLLF
SIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGT
ERDAQRIDALAGEYEDRFLFHYNMPPFATGETGRMGSTKRREIGHGRLAKRALAAMLPTK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEISSFAPRLMTLKINPEKIRDVIGKGGAVIRGLQEETGTQISIDEDGTITIA
STDPAKAEEAKKRIEQITAEVEIGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VERVQDYLTEGQIVKVKVLETDEKGRVKLSMKALTERPAGMEFQERAPREDRGGERRERS
DRGDRGGDRGERQPRFNNEQRNEPRSDSRNDQPAPVAEQAPRESQE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcaacaaagtcaccaagtcgttccaatggggcgacaagaccgtcattctg
gaaaccggtgagatcgcccgccaggctggcggcgcagtcatcgtcgacatcgaaggcacc
gtgatcctggcgaccgtggtcgcttccaagtcggccaagcccggccaggatttcttcccg
ctgaccgtcgactacatcgagaagacctacgctgcgggcaagatccccggcagcttcttc
aagcgcgaagccaagccaagcgaacacgaaacgctgaccagccgcctgatcgaccgcccg
atccgcccgctgtttccggaaggctttttgaacgaagtgcacgtggtcatccacacgctg
tcgctcaaccctgaaatcgacgccgatatcgctgccatgatcggcgtcagcgccgcgctg
tcgatttccggtattcctttcagcggaccgatcggcgccgcacgtgtcggctacatcaac
ggccagtacgtgctgaacccgggtcagacagcacgcaaggattcgctgatggatctggtc
gtcgccggcaccgaagccgctgtgttgatggtcgagtcggaagccaagcaactgtccgag
gaaatcatgctcggtggcgttgtgttcgggcatgagcaggccaacatcgcaatcaatgcg
attcacgaactggtgcgtgacgccggtaagccgatgtgggactggacggcacccgccgag
gacgaagccttcgtctcgaaggtcaagggtctggccgaagaaaaactgcgcgcggtctat
cagatccgcagcaagcaagcgcgtacgcaagcgctgcgcgaagcgaacgccagtgtcatg
gcatcgctgaaggcgagcggcgaaccgttcgatgccggcaaggtcaacgacttgttgttt
tctatcgaatcgaagatcgttcgcagccagatcctgtcgggtgaaccccgcatcgacggt
cgcgacacgcgcaccgtgcgcccgatcgaaattcgtaactcggtgctgccgcgcacgcac
ggctcggccttgttcacccgtggtgagacgcaggcgctggtcatcacgacgctgggcacc
gaacgcgatgcacagcgcatcgacgcgctggccggcgagtacgaagaccgcttcctgttc
cactacaacatgcctcccttcgccaccggcgaaaccggccgcatgggttcgaccaagcgc
cgcgaaatcggtcacggccgtttggccaagcgtgcgctcgccgcgatgctgccgaccaag
gaagaatttccgtacaccattcgcgtggtctcggaaatcacggaatcgaacggttcgtcg
tcgatggcttcggtctgcggcggctgcctgtcgatgatggatgccggcgtgccgatgaag
gcgcacgtcgccggcatcgccatgggcctgatcaaggaagacaaccgcttcgcggtgctg
accgacatcctgggcgatgaagatcatctgggcgacatggacttcaaggtggccggcacg
accaacggcatcaccgcgctgcagatggacatcaagatccaaggcatcaccaaggaaatc
atgcaggttgcactggcgcaagccaaggaagcgcgcatgcacatcctgggcaagatgcag
gaagcgatgggcgaagccaagaccgaaatttcgagctttgcaccgcgcctcatgaccctc
aagatcaacccggaaaaaatccgcgatgtgatcggcaaaggcggcgctgtcatccgcggc
ctgcaggaagaaaccgggacgcagatcagcatcgacgaagacggcaccatcacgatcgct
tcgaccgatccggccaaggccgaagaagcgaagaagcgcatcgaacagatcaccgctgaa
gtcgaaatcggcaagatctacgaaggcccggtcaccaaaattctggacttcggtgcgctc
atcaacctgcttccgggcaaggatggcttgctgcatatcagccagatcgcgcacgaacgc
gtcgagcgagtgcaggactacttgaccgaaggccagatcgtcaaagtcaaggtgttggag
accgacgaaaagggtcgcgtcaagctgtcgatgaaggcactgacggagcgtccggctggc
atggagttccaggaacgcgcgccgcgtgaagaccgtggtggcgagcgccgcgagcgctcc
gaccgtggtgaccgcggtggtgaccgtggtgagcgtcagccgcgtttcaacaacgagcag
cgcaacgagccgcgcagcgactcgcgcaatgaccagccggcgcctgtcgccgagcaagca
cctcgcgaatcgcaagagtga
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