Variovorax sp. PAMC28562: H7F36_18120
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Entry
H7F36_18120 CDS
T10649
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vax Variovorax sp. PAMC28562
Brite
Enzymes [BR:
vax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H7F36_18120 (hrpA)
Messenger RNA biogenesis [BR:
vax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H7F36_18120 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
QNK73055
UniProt:
A0A7G8VY62
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Position
complement(3859262..3863317)
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AA seq
1351 aa
AA seq
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MSSPPVAPAKANPVASAIRSPLKIEFPESLPVSARRDEIAAAIEANQVVIVCGETGSGKT
TQLPKIALLLGRGKLNKPPGQGKLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGFKVRF
QDRLSRDASVKLMTDGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYLREILPRR
PDLKIIVTSATIDADRFATHFASRNGPAPIIYVSGRTFPVEQRYRPYEESREYDLNNAIA
DGVDELWRDPHHVGDILVFLPGEREIREAADYLRGHLSHSPLMRNAEVLPLFARLSPAEQ
DRIFDGHTGRRIVLATNVAETSLTVPGTRYVIDTGTARVKRYSFRSKVEQLLVEPISQAA
ANQRAGRCGRVADGICIRLYDEKDFEGRPRFTDPEILRSSLAGVILRMKSLRLRDVSEFP
FLEAPSPRAISDGYQLLNELGAVDDNNELTATGAELARLPLDPRVGRMILEARSRGALEE
VLVIASALSVQDVRDRPMEAQQQADQAHAKFDDEKSEFSGYLTLWKWLGDARGGNAPMTR
RQMHGSEAKRPSAAVLSIAQRMAAPAAASAAEVAPTHKLSNRQYEQLLRQNFVNIRRVRE
WRDTHSQLLTVVTEHKWPLNPQPASYDALHLSMLAGLLGNIGWKMEDPSAGSGQSGDYLG
ARGIKFYPHPGAHLRKKPGRWIVAAELVETTRLFGRGIANIEPQWLEEVGGHLLKKQLLD
PHWEKKGAQVSALERATLYGLVVYSGRRVDFTKVDPVAAREIFIREALVGGQWESRFPFL
VANRKLVREVEGLEHKARRQDVLVDDELIYAYYDAQLPADVASGITFENWYRHASHDQPR
LLYLTRDELMRHTAAGITTQSFPPTVRLGGVDCAATYLHEPGDAKDGLTVSVPLFVLNQV
SEERCEWLVTGMLKDKIQALLKSLPQRPRSRLVPLPATAEKLLEALSVPEVFGAGSLTDV
LLKRVRDMTSIDVMRADFKLDMLPPHLFMNLRVVDEHGRQLGMGRNLGALKAELGAQARG
AFQALAGLNVKVTTAPDAADAQAGADKKPTGKAEPGTRSNATPAPSLPAGQRYTAWTFGE
LPELMEVRRGSQSLIGFPALLDAGDAVTIEVFDEPAVAASKHRAGLRRLVALQLKDALKY
LEKNIPDLPKMAVAYMSLGTADELRLQIIEVALDRAFLQEPLPTDEFAFKRRIEEGRGRL
TLIANEVARLTGIILVDYAVAVRKIKDTKVQPDATADAAQQLQRLMGKRFLADTPWPQLQ
HFARYLKAITLRLDKLRADPARDAAKLAELRPQEQRYWRLFAERKGVTDERMSEFRWLLE
ELRVSFFAQELRTPQPVSIKRLDKAWTQLHT
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcctcccgtcgctcccgccaaagccaatcccgtcgcctctgccattcggtcg
ccactgaagatcgagttccccgaatcgctgccggtgtctgcccggcgcgacgaaattgcc
gctgccatcgaggcgaaccaggtcgtgatcgtgtgcggagagaccggctcgggcaagacc
acgcagttgcccaagatcgccttgctgctcggccgcggcaagctgaacaagccgccgggg
cagggcaagctcattggccacacgcagccacgacggattgcagccagctcggtggccaag
cgcattgccgaagaactgaagacgccgctcggcgacgtggtcggcttcaaggtgcggttc
caggaccggttgagccgcgacgcctcggtcaagctgatgaccgacggcatcctgctggcc
gagacgcagaccgatccattgctgaaggcctacgacacgatcatcatcgacgaggcgcac
gaacggtcgttgaacatcgactttttgctcggctacctgcgcgaaatcctgccgcgacgg
cccgacctgaaaatcatcgtgacgtcggccaccatcgacgccgatcgctttgcgacgcac
tttgcgtcacgcaacgggccggcgccgatcatctatgtctcgggtcgcaccttcccggtc
gagcagcgctaccggccttacgaagagtcgcgcgagtacgacctcaacaacgcgatcgcc
gatggggtcgacgaactctggcgcgatccgcaccacgtcggcgacatcctggtcttcttg
ccgggtgaacgcgagatccgagaggcggcggactatctgcgcgggcatctgagccacagc
ccgctgatgcgcaatgccgaggtgctgccgctctttgcgcgtctctcgccggccgagcag
gaccgcatcttcgacggccacaccgggcggcgcatcgtgctggccaccaacgtggccgaa
acctcgctcaccgtgccaggcacgcgctatgtcatcgataccggcacggcgcgcgtcaag
cgctacagctttcgcagcaaggtcgagcagctgctggtcgagccgatcagccaggcggcg
gccaaccagcgtgccggccgttgtggccgtgtcgccgacggcatttgcatccggctctac
gacgaaaaagacttcgaaggtcggccgcgtttcacagacccggaaatcctgcgctcatcg
ctggcgggcgtcatcttgcggatgaagtcgctgcggctgcgcgacgtctcggagtttccg
tttctcgaagcgccatcgccgcgcgcgatttccgatggctatcagctgctcaacgagctg
ggcgcggtcgacgacaacaacgaattgaccgcgaccggtgccgagttggcgcgcctgccg
ctcgacccgcgtgtcggccgaatgatcctggaggcacggtcacgcggcgcgctcgaagag
gtgctggtcattgcgtcggccctcagcgtgcaggacgtgcgcgaccggccgatggaggcg
cagcagcaggccgaccaggcacacgccaagttcgacgacgagaagagcgagttcagcggc
tacctcacgctgtggaagtggctcggcgatgcgcgtggcggcaatgcaccgatgacgcgc
cggcagatgcacggcagtgaggcgaagcggcccagcgccgccgtgctgtcgatcgcccag
cgcatggccgcgccggcagcggcgagcgccgcggaggtcgctccgacccacaagctcagc
aaccgccaatacgagcagttgctgcggcagaacttcgtcaacatacggcgcgttcgcgaa
tggcgcgacacgcattcgcaactgctgacggtcgttaccgagcacaaatggccactcaat
ccgcagccggccagctatgacgcattgcacctgtcgatgctggccggactgctcggcaat
attggctggaaaatggaagatccgtcagcgggttcaggacagtccggcgactacctgggc
gcgcggggcatcaagttctatccgcatccgggcgcgcacctgcgcaagaagccgggccgc
tggatcgtcgccgcggagctggttgaaaccacgcgacttttcggtcgaggcattgccaac
atcgaaccgcaatggctggaagaagtcggtggtcatctgctgaaaaagcagctgctggat
ccgcattgggaaaaaaagggcgcgcaggtgtccgccttggagcgggcgactttgtacggc
ctggtggtgtacagcggtcggcgcgtcgacttcaccaaggtcgacccggtggcggcccgc
gaaatcttcattcgcgaagcgctggtcggcgggcagtgggagagccggtttccgtttctg
gtcgccaaccgcaagctggtgcgcgaggtcgaaggtctggagcacaaggcgcgccggcag
gacgtgctggtcgatgacgaactcatctacgcgtactacgacgcgcagttgccggccgac
gtggcgagcggcatcactttcgaaaactggtaccggcacgcttcgcacgatcagccgcgc
ctcttgtaccttacgcgcgacgaactgatgcggcacacggccgccggcatcacgacgcaa
tcgtttccgccaacggtgcggctgggcggtgtcgattgcgcggcgacgtatcttcacgag
ccgggcgatgcgaaagacgggctcaccgtcagcgtgccgctcttcgtgctcaaccaggtg
agcgaagaacgctgcgaatggctcgttaccggcatgctgaaggacaagatccaggcactg
ctgaaaagcctgccgcagcgtccgcgttcgcgcttggtgccgctgcccgccacggctgaa
aagctgctcgaagcgttgtcggtgcctgaggtgttcggtgccggctcgctgacggatgtg
ctgctgaagcgcgtgcgcgacatgaccagcatcgatgtgatgcgcgccgacttcaagctc
gacatgctgccgccgcacctgttcatgaatctgcgggtggtcgatgagcatggacgccaa
ctcggcatggggcgcaacctcggcgcactgaaggcagagttgggcgcgcaggcgcgtggc
gcgttccaggcgttggccgggctcaacgtgaaggtcacgacggcgccggatgctgcagat
gcgcaagccggtgccgacaagaagccaacgggaaaggccgagccgggcacacgcagcaat
gcgacgcccgcaccatcgctgcctgcaggacagcgctacacggcatggactttcggcgag
ctgccggagttgatggaagttcggcgcggctcgcaatcactgatcggttttccggcgttg
ctggatgccggcgacgcagtcaccatcgaggtcttcgacgaaccagcagtggcagcgtcc
aagcaccgtgccggcttgcgtcggcttgtggcgctgcagctgaaagatgcgctcaagtac
ctcgaaaagaacatccctgatttgccgaagatggcggtcgcctacatgtcgcttggcact
gccgacgaattgcggttgcaaatcatcgaagtcgcgctcgatcgggcgttcctgcaggag
ccgctgccgaccgacgagttcgccttcaagcggcgcatcgaagagggccgcggccgcctt
accttgattgccaacgaagtggcacggctgacgggcatcatcctcgtcgactatgcggtg
gcggtacgcaaaatcaaggacaccaaggtgcagcccgacgcaacggcggacgccgcgcag
caattacaacggctgatgggcaagcgcttcctggccgacacgccctggccgcaattgcag
cacttcgcgcgctacctgaaggccatcaccttgcggctcgacaagttgcgtgccgacccg
gcccgcgacgccgccaagctggctgaactcaggccgcaggaacagcgctactggcgcctg
tttgccgagcgcaagggggtcaccgacgagcgtatgagcgaatttcgatggctgctcgag
gagttgcgcgtcagcttcttcgcgcaggaactccgaacgccgcagccggtgagcatcaag
agactcgacaaggcctggacgcaactgcatacgtga
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