Variovorax sp. PAMC28562: H7F36_18805
Help
Entry
H7F36_18805 CDS
T10649
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7F36_18805 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vax03019
]
H7F36_18805 (rnr)
03016 Transfer RNA biogenesis [BR:
vax03016
]
H7F36_18805 (rnr)
Enzymes [BR:
vax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H7F36_18805 (rnr)
Messenger RNA biogenesis [BR:
vax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H7F36_18805 (rnr)
Transfer RNA biogenesis [BR:
vax03016
]
Prokaryotic type
tRNA degradation factors
H7F36_18805 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QNK76050
LinkDB
All DBs
Position
complement(4002457..4004775)
Genome browser
AA seq
772 aa
AA seq
DB search
MKNNGHPSGLLDEIEGSVQGHRDGHGFVQRDDGEADIYLPPNEMRAVLHKDRVKARVVRQ
DRRGRPEGRVVEIVERPEQPIIGRLLHEGGIWLVAPEDKRYGQDVLIPKGATGTAKVGQV
VVVQLTEPPALFGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSEACLAEARALPDA
VRPADKKGRIDLTDVPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSSYVQT
GSGIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVAADGEIYAY
QFYPAVMFSHARFTYTEVAAILVNTRGPEAAKRKDRVKDLLNLSDVYKALLKQRGKRGAV
DFETTETQIICDDAGRIEKIVPRTRNEAHRLIEEAMLAANVCSADFIAEGKHPGLYRVHE
GPTPEKKEILRGYLKAMGVGLSITDDPKPGEFQAIALATKERPDAQQISTMLLRSMQQAI
YTPINSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILNKQKYTLPMLPTPGEAHAKLA
KRLASRVKAPTTKPEKAAVAPTKEVQAWQAAGLHCSANERRADEASRDVEAWLKCKYMRE
HLGEEYGGVVSSATTFGIFVTLDAMYVEGLVHITELGGEYFKFDEMRQELRGERTGMRYA
IGTRVRVQVSRVDLDGRKIDFRLVREGEDLTSRAMKDKGVSSNGAPVKASAKRGSRHKSE
AVAERGHDRVIAAASAGGNVAMAAAAPQSAMQAFKSAVKNAANKMKGRKPRR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atcaaaaataatggccatcccagcggcttgctggatgagatcgaaggctcggttcaaggg
catcgcgatgggcacggcttcgtacaacgcgacgatggtgaagccgacatttacttgccg
cccaatgagatgcgtgcggtactgcacaaagaccgcgtcaaggcgcgcgtggtgcgacaa
gaccgtcgcggcaggcctgaaggccgtgtcgtagagatcgtcgagcgccccgagcaaccc
atcatcggccggctgttgcatgagggcggcatctggcttgtcgctcccgaagacaagcgc
tacgggcaagacgtgctgattccgaaaggcgctaccggcaccgccaaggtcggccaagtc
gtggtggtgcagctcaccgagccgcctgcactgttcggtcagccggtcggtcgcgtcaaa
gaggtattgggcgagatcgacgatcccggaatggaaatcgaaatcgcggtgcgcaagtac
ggtgtgccgcatgagttctcggaggcgtgtctggccgaagccagagcattgcccgacgcg
gtgcgccccgccgacaagaaggggcgcatcgacctgaccgacgtgccgcttgtcaccatc
gacggcgaggacgcgcgcgacttcgacgatgccgtgtactgcgagccggccaaggtcgga
cgtggcaagggctggcgattgctcgttgccattgccgatgtgagctcgtacgtgcagacc
ggctcgggcatcgacatcgacgcgtacgaccgcgccaccagcgtctattttcctcgccgt
gtcattccgatgctgccggaaaagttgagcaacggcttgtgctcgctcaaccccgaagtc
gagcgcctgtgcatggtgtgcgacatgctggttgcagccgacggtgagatctacgcgtac
cagttctacccggccgtgatgttcagtcatgcgcgcttcacgtacaccgaagtcgcggcg
attctggtcaacacgcgtggccctgaagcggccaagcggaaagaccgcgtgaaggacttg
ctgaacctgtccgacgtgtacaaggcactgctgaagcaacgcggcaagcgtggcgcggtc
gacttcgaaaccaccgagacgcagatcatttgcgacgacgccgggcgcatcgaaaagatc
gtcccgcgtacgcgcaacgaggcgcaccggttgatcgaagaagccatgctcgcggccaac
gtatgcagcgccgacttcatcgccgaaggcaagcaccccggtctctatcgtgtgcacgaa
ggcccgacgcccgagaagaaggaaatccttcggggctacctgaaagcaatgggcgtcggc
ttgtcgatcaccgatgatccaaagcccggcgagttccaggcgatcgcgttagcgacgaag
gagcggcccgacgcgcagcagatatccacgatgttgttgcgctcgatgcagcaagcgatc
tacacgccgatcaacagcggtcacttcggtttggcttacgaggcttacacgcacttcacc
agcccgattcgccgttaccctgatctgcttgttcaccgcgtcatcaaggcgattctcaac
aagcagaagtacacgctgccgatgttgccgacgcctggcgaggcgcatgccaagctcgca
aagcggctggcatcgcgcgtcaaggcgccgaccaccaagcccgagaaggctgccgttgcg
cccaccaaggaagtccaggcctggcaggccgccggcttgcattgcagtgccaacgagcgc
cgtgccgacgaagccagccgcgacgtcgaggcgtggctcaagtgcaagtacatgcgcgag
catctcggtgaagaatatggtggcgtcgtcagttcggcgacgaccttcggcatcttcgtc
acgctcgacgcgatgtacgtcgaagggctggtgcacatcaccgaactgggtggcgagtac
ttcaagttcgacgagatgcggcaggaacttcgtggcgaacgcaccggtatgcggtatgcg
atcggcacgcgtgttcgtgtgcaggtgagtcgcgtcgatctggatggtcgcaagatcgat
ttccggctggtgcgcgaaggcgaagacctcacctcgcgcgctatgaaggacaagggcgtg
tcgtcgaacggcgcacccgtcaaggcttcggcgaagcgcgggtcgcggcacaagtctgaa
gccgttgccgagcgcggacacgatcgagtcattgctgctgcaagtgcaggcggcaacgta
gcgatggcagcggcggcgccgcaatcggccatgcaggctttcaagtcggccgtgaagaac
gccgcaaacaagatgaaggggcgcaagccgcgccgttga
DBGET
integrated database retrieval system
