Variovorax sp. PAMC28562: H7F36_19815
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Entry
H7F36_19815 CDS
T10649
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03030
DNA replication
vax03430
Mismatch repair
vax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7F36_19815 (dnaE)
03430 Mismatch repair
H7F36_19815 (dnaE)
03440 Homologous recombination
H7F36_19815 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vax03032
]
H7F36_19815 (dnaE)
03400 DNA repair and recombination proteins [BR:
vax03400
]
H7F36_19815 (dnaE)
Enzymes [BR:
vax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H7F36_19815 (dnaE)
DNA replication proteins [BR:
vax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H7F36_19815 (dnaE)
DNA repair and recombination proteins [BR:
vax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H7F36_19815 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QNK73329
LinkDB
All DBs
Position
complement(4228750..4232265)
Genome browser
AA seq
1171 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEVVAAAAADKQPALAITDLNNLFGAVKFYKEARSKGVKP
VLGCEVMLEGLGAEIGAVTRIVLLVQNTEGYLHLSELLARAWTQNVGRGQAQAVCKLAWL
EELQGGLICLSGAQAGPLGAPLLQGHAERATAVALQLASLFPHRFYIELQRAGRPEDEPH
VIAAVQLAARLKLPVVATHPVQFADREGYEAHEARVCISEGEILGNPRRVRKFTREQYFK
SVAEMEALFVDVPSAVANTVEIAKRCNLTLVLGKPQLPNFPTPEVDGVRMPIDEFFRVES
FEGLEARLAHLYPDLAKRDVERPRYVERLEFEINTILKMGFPGYFLIVGDFIKWAKNNGC
PVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVID
YVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGQPVTIQYP
PNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAPGK
LTDFCPLYQQPGSDSAVSQFDKDDVEAIGLVKFDFLGLATLTILEIAKDFIIARHKGQEQ
FAYEDIKLDDAHTYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGPM
DLIPSFVARKHGREPVEYPHPLVEEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRR
AMGKKKLEEMAEHREIFRKGAAVNKIGQEKADEIFDLMEKFAGYGFNKSHAAAYSLLAYH
TGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAIKNFGISFEPPDVNRGNYRFEPVTDK
SIRYGLGAVKGTGQFAVEAIVKARNASGPFKSLFDFCVRVDRQRINKRTVEALIKAGAFD
SIQQNRASLIASVDKAFDFASATEANASQVDIFGDSEHGSATQEPELVDATPWGVKERLT
LEKTAVGFYLSGHLFDEVAHEVRRFCKREVGDLMDSREPQIIAGIVSDFRVINGQRGRLA
IFKLDDKSDSIDATADEALFNANRNTLKDDELVILSGKLQPGRGGFEARFQVQQVWDLAS
ARCRFGKFLRVAVNGKAPDIARIARDFPPRTEMGEHGELRQGLPVRLSLARGGAQVELQL
GESAKFFPTDAALASWTAQAEAGKAAVIYEL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgttcgttcacctccgcctgcacaccgaattttccgtcgtcgacggtaccaaccgaatc
gacgaagtcgtcgccgccgccgctgccgacaagcagccggcgctggccatcaccgacctg
aacaacctgttcggtgcggtcaagttctataaggaagcgcgcagcaaaggcgtcaagccc
gtgctgggctgcgaagtcatgctcgaaggcctcggcgccgaaatcggtgcagtgacgcgc
atcgtcttgctggtgcaaaacaccgagggttatttgcacctctcggagttgctggcgcgc
gcatggacgcagaacgtcggccgcggtcaggcgcaagctgtgtgcaagctggcatggctc
gaagagttgcagggtgggctcatctgcctgtcgggcgcgcaagccgggccgctgggcgcg
ccgctgttgcaaggccacgccgagcgcgcaacggcggtcgccttgcaactcgccagcctg
ttcccgcatcgcttctatatcgagttgcagcgcgccggtcgacccgaagacgagccacac
gtcatcgccgcagtgcaactcgctgcacgccttaaattgccggtggtcgcgacgcatccg
gtgcaattcgcagaccgcgagggttatgaggcgcacgaggcgcgcgtctgcatttccgaa
ggcgaaattcttggcaatccgcgccgtgttcgcaagttcacgcgggagcagtatttcaag
tcggtcgccgagatggaagcgctcttcgtcgacgtgccgagcgctgtcgccaacacggtt
gaaattgccaagcgctgcaacctgacgctggtgctcggcaagccgcaattgccgaacttt
ccgacgcctgaggtcgatggcgtgcgcatgccgatcgacgagttcttccgcgtcgaatcg
ttcgaggggctcgaggcgcgtctggcgcatctttaccccgatctcgcaaagcgcgatgtc
gagcggccgcgctatgtggagcggctcgagttcgagatcaacaccatcctgaagatgggt
tttcccggctattttttgatcgtgggcgacttcatcaaatgggccaagaacaacggttgt
ccggtgggcccgggccgcggttcgggcgctggctcgctcgtcgcttatgcactcaagatc
accgacctcgatccgcttgaatacaagctgctgttcgaacgtttcctgaacccggaacgc
gtgtcgatgcccgacttcgatatcgacttttgccagggaaatcgcgatcgtgtgatcgac
tacgtcaaggacaagtacgggcgcgacgcggtgagccagatcgccaccttcggcaccatg
gccgcacgggccgcgattcgcgacgtgggccgcgtgctcgacatgagctacatgttctgc
gatggcatcagcaagctgatcccgaacaagccgggacagccggtgacgatccagtaccca
cccaacccgaaggtcgagggcgacaagaacaactacgccatcgagatggagccgcaactc
gcggcccgcatcgagaaggaagaagaagttcgcatgctggtcgagctggcacaaaagctc
gaaggcatgacgcgcaacatcggcatgcatgcgggcggcgtgctcatcgcgcccggcaag
ctcaccgacttttgcccgctttaccagcagcccggcagcgactcggcggtgagccagttc
gacaaggacgacgtcgaagcgatcggcttggtcaagttcgacttcttgggactcgcaacg
ctgacgattctggagatcgccaaggacttcatcatcgcgcgacacaagggccaggagcag
ttcgcctacgaggacatcaagctcgacgacgcgcacacctaccgcctgttctccgaaggc
aagacggaggcggtgttccagttcgaatcgcgcggcatgcagggcatgctgaaagacgcg
cggccgacgcgcctcgaagacctgatcgcgctcaacgcgttgtatcggccggggccgatg
gacctgatcccgagcttcgtcgcgcgcaagcacggccgcgagccggtcgagtacccgcat
ccgctggtcgaagagatgctgtcggagacctacgggatcatggtctaccaggagcaggtc
atgcagaccgcgcagatcctgggcggctattcgctcggtggcgccgacctgctgcgccgc
gcgatgggcaagaaaaagctcgaagaaatggccgagcaccgcgagatttttcggaagggc
gcagcggtcaacaagatcgggcaagagaaggccgacgagatcttcgacctgatggagaag
ttcgcgggttacggcttcaacaagtcgcatgccgctgcttactcgctgctggcgtatcac
accggctggttgaaggtccattacacggccgagttcttctgcgcgaacatgaccgttgaa
atggacgacaccgacaagttgaaggtgctgttcgaagacgcgatcaagaacttcggcatc
agcttcgagccgccggacgtgaaccgcggcaactaccgcttcgagccggtaacggacaag
tcgattcgctatggcctgggcgccgtcaagggcaccgggcagttcgcggtcgaagcgatc
gtcaaggcgcgcaacgccagcgggcctttcaagagcctgttcgatttttgcgtgcgagta
gatcggcagcgcatcaacaagcgcacggtcgaggcgctcatcaaggcgggcgccttcgac
tcgatccagcagaaccgcgcgtcgctcatcgcgtcggtcgacaaggccttcgacttcgcg
agcgccaccgaagccaacgcttcccaggtcgatatcttcggcgacagcgagcatggctcg
gcgacgcaagagccggagctggtcgacgccacgccatggggggtgaaggagcgtttgaca
ctcgagaagacggccgtcggtttctatctgtcgggacacctgttcgacgaggtcgcgcac
gaggtgcggcgcttctgcaagcgcgaggtgggtgacctgatggacagccgggaaccgcaa
atcatcgcgggcatcgtgagcgactttcgtgtcatcaacggacagcgtggtcgactggca
atcttcaagctcgacgacaagtcggactcgatcgacgcgaccgccgacgaggcgctgttc
aacgccaatcgcaacacgctgaaggacgacgaactggtgatcttgagcggcaaactgcag
ccgggtcgcggaggtttcgaggcgcgttttcaggtgcagcaggtgtgggacctggccagt
gcgcgttgccgcttcggcaagttcctgcgcgtggcagtcaatggcaaggcgccggacatt
gcgcgcatcgccagagactttccaccgcgcaccgagatgggcgagcacggtgaattgcgg
caggggctgccggtgcgtttgtcgctggcgcggggcggggcgcaggttgaattgcagctg
ggggaaagcgcgaagttcttcccgaccgatgcggcgctggcgagctggacggcgcaggct
gaagcgggcaaggccgcggtgatctacgagttgtag
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integrated database retrieval system
