Variovorax sp. PAMC28562: H7F36_21440
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Entry
H7F36_21440 CDS
T10649
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7F36_21440 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vax03019
]
H7F36_21440 (pcnB)
Enzymes [BR:
vax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
H7F36_21440 (pcnB)
Messenger RNA biogenesis [BR:
vax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H7F36_21440 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF3010
Motif
Other DBs
NCBI-ProteinID:
QNK73611
UniProt:
A0A7G8VZR8
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All DBs
Position
complement(4559909..4561570)
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AA seq
553 aa
AA seq
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MIKTFIDKLLGKSADGSRGKSRFGKRQEVAASVHGIDPALVDERAKNVVTTLQQAGFEAY
VVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRAFIIGRRFRIVHVVYGRGREHEVIE
VSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVDASGRVLRDNVWGPQEEDAARRDFTV
NAMYYDPANQVVVDYHNGIKDAQKLTLRMIGDPATRYREDPVRIIRAIRFSAKLAALGFK
MEAKTAAPLIESSKLLADVPQSRLFDEMLKLLQTGHAIATVAQLRKLGLAKGIYPLLDVV
VERADQAFVKAALIDTDRRVGEGKPVAPSFLLACVLWADVRDGWAARLEGRNGQRGQPAY
PALQDAIDDVFNSRIGDVSGRGKLAADMREIWMMQPRFDKRSGATPYSLVEQARFRAAFD
FMRLRADVGEISEAIGEWWQEFSTADDLRRQDLMDQVRDEQKTRQRVRVRDPLPKDSASP
NAPREPQDVRGIGGDQDDRGERDEADAPGGEFPQEGEGTAAPRKRRRRRKPRAGGGGEGS
DGGAEGDGGAAAA
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagacattcatcgacaaactgctcggcaaatccgccgacggctcccgcggcaaa
agccgcttcggcaagcgccaggaggtcgccgcctcggtgcacggcatcgacccggctttg
gtcgatgagcgcgcgaagaacgtggtcaccacgcttcaacaggccggcttcgaggcgtat
gtggtcggcggcgcggtgcgcgacttgctgctcggcctgcgtcccaaggacttcgacgtg
gcgaccaacgcaacgccggagcaagtcaaggggctctttcgccgcgccttcatcatcggc
cggcgctttcgcatcgtgcacgtggtgtacggccgtggccgcgaacatgaagtgatcgaa
gtttcgacctttcgcgcctacatggacaacgccgccgccgagcaggtcgccggtaacgag
cgcaccagcaagggcgaactggccagcatgaagcatgcggtcgacgccagcggccgcgtg
ttgcgcgacaacgtctggggcccgcaggaagaagacgcggcgcgccgcgacttcaccgtc
aacgcgatgtactacgaccccgccaatcaggtggtcgtcgactatcacaacggcatcaag
gacgcgcagaagctgacgctccggatgatcggcgatccggccacgcgctaccgcgaagac
ccggtgcgcatcattcgcgcaatccgtttctcggccaagctggctgcgctcggcttcaag
atggaagcgaaaacggccgcgccattgatcgagtccagcaaactgctggccgacgtgccg
cagagccgcttgttcgatgagatgctgaagttgctgcaaaccgggcacgcgattgcaaca
gtcgcacaactgcgcaagctcgggctcgccaagggcatctatccgctgctcgatgtggtg
gtcgagcgggccgaccaggccttcgtcaaagccgcattgatcgacaccgaccgccgtgtc
ggtgaaggaaagccggtggcgccgagcttcctgctggcctgcgtgctgtgggccgatgtg
cgcgacggctgggcagcgcgactcgaaggccgcaacggacaacgcggccagccggcctat
ccggcactgcaagacgcgatcgacgacgtcttcaattcgcgcatcggcgacgtgtcgggt
cgcggcaagctggccgccgacatgcgcgagatctggatgatgcagccgcgtttcgacaag
cgcagcggcgcgacgccttacagcctggtcgagcaggcacgctttcgcgccgcgttcgac
ttcatgcggttgcgcgccgatgtcggtgagatcagcgaggccatcggcgagtggtggcag
gaattcagcacggcagacgatctgcgccggcaagacctgatggaccaggtccgcgacgaa
cagaaaacgagacaacgggtgcgcgtccgcgatccgctgccaaaagacagtgcttcgccg
aacgcgccgcgtgagccgcaggatgttcgtggtatcggcggtgaccaggacgatcgcggt
gaacgcgatgaggccgatgcgccgggcggtgagttcccgcaggagggcgagggtacggct
gcaccgcgcaaacgacgtcgccggcgcaagccgcgcgcgggcggtggcggcgaaggcagc
gacggcggtgcagagggcgatgggggcgctgcagcagcatga
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