Variovorax sp. PAMC28562: H7F36_21880
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Entry
H7F36_21880 CDS
T10649
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7F36_21880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vax03019
]
H7F36_21880
03009 Ribosome biogenesis [BR:
vax03009
]
H7F36_21880
Enzymes [BR:
vax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H7F36_21880
Messenger RNA biogenesis [BR:
vax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H7F36_21880
Ribosome biogenesis [BR:
vax03009
]
Prokaryotic type
rRNA processing factors
H7F36_21880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DUF8501
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
QNK73689
LinkDB
All DBs
Position
4664553..4667792
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSASQARIQDAIREGQELVVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKENMDQLEYPKGASIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGASKGAKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESR
LRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEECLKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPN
YRLERLKHDDPRLDHIEASYKMAEEIEDPTSVTRRSQEPTNKQTPIIKGVLPDAPAPVAV
PKPEVVRAAPVAAPVAATPAPVAPPVIAKAPAETGFFAKLKSWFAAPAAPMPAPAPAVIP
VEAAKPARRDGRPSRDGESRGAREGEPRRGGRGGEGRDRGNGRDGERRGGRGGERRDGER
QGGERREPREGQAEVRSEAQIREPREAREAREPREPREGRGPRDGERRGRGGRRDAEVRA
DAPETLEGTALEGAAATPQALAGEPGAAPSERAPRGRGERRDRSDRNDRGDRNDRNADAP
RDRGTDAPNDAVADGSVEGAPSGERSTRGGRGDERSSRGERGERGEGRRERRPEDGARPS
EDAAQGANPELMVEPSDANQQGDVIGSEAPRREGDDRRGRSRDRFGRDRRERAPREGAEE
AGVTALAPESLAHAESSDERAEPLAPTSYFAPFRAAAAQAPALAAETPQSAGGVAETTAI
ATAPVPAPAAIPAPAPVKASTAPQTSRALPKVQPFELPLAELAQVAEGSGLHWVNSDAAR
IAQAQAAMAAEPRPAHVPRPRPPAVVLEEGSLVLVETRRDLAGMTLPFEQAVQQIDSAR
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgttgatcaatgccacgcagcctgaagagcgccgcctggccatcgtcgat
gggcaaaagctcctcgactacgagatcgaaatcgaaggacgtgagcagcgtaaaggcaac
atatacaaagcagtcgtgacgcgggtcgagccgtcgctcgaagcctgctttgtcgactac
ggcgaagaccgccacggctttctgccgttcaaggaaatctccaagcaatacttcgccgaa
ggcgtgtcggccagccaggcccgcatccaggacgctatccgtgaaggccaggaactggtc
gttcaggttgaaaaggaagaacgcggcaacaagggcgctgccctgaccaccttcatttcg
ctggccggccgctatgtcgtgctgatgccgaacaacccgcgtggcggtggcgtttcgcgt
cgcattgaaggcgaagatcgggctgagctcaaggaaaacatggaccagctggagtacccg
aagggtgccagcatcatcgcccgcaccgccggcatcggccgctccgcacctgaactgcag
tgggacttgaattacctgctcaagctgtggacggccatcgacggcgcatcgaagggcgcg
aagggcgccttcctgatctatcaagagtcgagccttgtcatccgcgctattcgtgactac
ttcaatcacgacatcggcgacatcctgatcgacaccgacgacatctacgagcaggcgcag
cagttcatggcgcacgtcatgcccgagcacgcagcccgcgtaaagcgctaccgcgacgac
gcggcgctgttttcgcgcttccagatcgagcaccagatcgaatcggcgtatgcccgcaca
gtgcaactgccgagcggcggcgccatcgtgatcgaccacaccgaagcactggtgtcggtc
gacgtcaactcggcccgagccatcaaaggcggcgacatcgaagaaaccgccacccgcacc
aacctcgaagccgccgatgaagtggctcgccagatgcgcctgcgcgatttgggcgggctg
atcgtcatcgacttcatcgacatggacgagtcgaagaaccgccgcgaagtcgaaagccgc
ctgcgcgatgcgctgcgccaagaccgtgcgcgtgttcaattcggctcgatcagcaagttc
ggcctgatggaaatgagccgtcagcgcctgaaaccggcactgagcgaaggctcgtcgatt
ccttgccctcgctgcggcggctcgggccacatccgcgatacggaatccagcgcgctgcag
atcctgcggatcattcaggaagaatgtctgaaggacaacacggccgcggtgcacgttcaa
gtgccggtcgaagtcgcttcgttccttctgaacgaaaagcgccccgaaatcgccaagatc
gaactcaagcagcgcgtgaccgtgctgatggtgccgaacaaaacgctcgaaacgccgaac
taccggctcgagcgcttgaagcacgacgacccgcgcctcgaccacatcgaagccagctac
aagatggccgaagaaatcgaagatccgacttcggtcacgcgtcgctcgcaagagccgacc
aacaagcaaacgccgatcatcaagggcgtgctgcccgatgcacccgctccggtggcagtg
cccaaacctgaggtcgtgcgcgcagcacccgtcgcggctccggtggcggcaacgccagcc
ccggtcgcgcctcctgtaattgccaaggcgcctgcagaaaccggcttctttgccaagctc
aagagctggtttgccgctccagcagcacccatgccagcaccagcacctgccgtcattccg
gtggaagcggcaaagccggcgcgtcgcgacggacgtccgtcccgcgatggcgaaagccgc
ggagcgcgtgaaggcgagccgcgccgcggtggacgcggtggcgaaggccgcgaccggggt
aatggtcgcgatggcgagcgccgcggtggacgcggcggtgagcgtcgcgacggagagcgt
caaggcggagaacgccgcgagccgcgcgaaggtcaagccgaagtgcgcagcgaagcgcaa
atccgggagcctcgcgaagcgcgtgaggcacgcgaaccacgggaaccacgcgaaggccgc
ggccctcgcgacggcgaacgtcgtggtcgcggcggacgccgcgatgcagaagtgcgcgct
gatgcccctgaaaccctggaaggcaccgcgcttgagggtgcggcagcgacgccgcaagca
ctggctggtgaacccggcgcagcgccatccgaacgcgcgccgcgtggacgcggtgagcgt
cgcgatcgctcggaccgcaacgaccgtggcgatcgaaacgatcgcaatgcagatgcgccg
cgtgatcgaggcaccgatgcgccgaacgacgccgtcgccgatggcagcgtcgagggcgct
ccgagcggcgagcgcagcacgcgcgggggacgtggcgacgagcggtcgtcccgcggtgaa
cgcggtgagcggggtgagggccgccgtgaacggcgacctgaagacggcgctcgccctagc
gaggacgcggctcaaggagcaaaccctgaactgatggtcgaaccctccgacgccaatcaa
cagggcgacgtgatcggcagcgaagcgccacggcgcgaaggcgacgaccgtcgcggccgc
tcgcgcgaccggttcggtcgtgaccgccgcgaaagggcgccacgcgaaggcgcggaagag
gctggcgttactgcgcttgctccggagtcgctcgcgcacgccgagtcgtctgacgagcga
gccgagccacttgcaccgacgtcgtactttgctcccttccgggcagcggcagcccaggca
ccagcgcttgccgctgagacgccgcaatcggcgggcggtgttgctgaaacaaccgcaatc
gctacggcgccggtaccagcgccagcagcaatcccggcgcctgcacccgtgaaggcatcg
accgctcctcaaacttcacgcgctctgccgaaggttcaaccgttcgaactacctcttgcg
gaattggcgcaggtcgccgaaggctccggactgcattgggtgaactccgatgccgcacgg
atcgcccaggcacaggcagccatggctgcggagccgcggccggcgcacgtgccgcgtcct
cgcccacccgcggtggtgctggaagaaggttcgctggtactggtcgagacgcgtcgcgac
cttgccggcatgacgcttccgttcgagcaagccgttcagcaaatcgactcggcgcgctaa
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