Variovorax sp. YR566: ACTG4X_05265
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Entry
ACTG4X_05265 CDS
T11729
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vay Variovorax sp. YR566
Pathway
vay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACTG4X_05265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vay03021
]
ACTG4X_05265 (rpoC)
03400 DNA repair and recombination proteins [BR:
vay03400
]
ACTG4X_05265 (rpoC)
Enzymes [BR:
vay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACTG4X_05265 (rpoC)
Transcription machinery [BR:
vay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACTG4X_05265 (rpoC)
DNA repair and recombination proteins [BR:
vay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACTG4X_05265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XYV77470
LinkDB
All DBs
Position
1136783..1141018
Genome browser
AA seq
1411 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFVAKM
GAEGIKDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGELQRALDANEV
ELTAKVAVRITEYTKNKETGEFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIERSAKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQRVIDRHGKEVEQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRILG
RSAADDVLHPENRSVLLKAGEMFDEDNIEALEAQGVDEVKVRTALTCETRFGICATCYGR
DLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIGFN
ATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHVLANW
DPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DASGAEVKIPGTDHSVTIGFPIGALVQIRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGTVWEDLVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNIGDTSYISGEQVERSEMLNTNDALRADGKIPATFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVKDAMDEAERRA
IAESEAAELAGSAESDAAASTADASEGAATE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgcctgatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaagatccgttcgtggtctttcggcgaggtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgcgacggtctcttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccgtcgcgcctgggcctcgtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtgatcaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactacgacgcgaagcgcaaggaatacggtgacgaattcgtcgccaagatg
ggcgccgaaggcatcaaggatctgctcgaaggcatcgaactcgacagcgagatcgaacgc
ctgcgcggcgacctgaccggctccgaagtcaaggtcaagaagaactccaagcgcctgaag
gtgctggaagccttccgcaagtcgggcatcaagcccgagtggatggtgctcgacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtatcgccgcgtcatcaaccgcaattcgcgtctgcgccgcctg
ctggagctgaaggctccggaaatcatcgcgcgcaacgaaaagcggatgctgcaggaagct
gtcgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaatctg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgacgctcaag
ctgcaccagtgcggcctgccgaagctgatggcgctcgagctgttcaagcccttcatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggctgccaagaaggaagtcgaa
tcgggcacgccggtggtctgggacatcctggaagaggtcatcaaggagcacccggtcatg
ctgaaccgcgctccgacgctgcaccgtctgggcatccaggccttcgaaccgatcctgatc
gaaggcaaggccatccagctgcacccgctcgtctgcgcggcattcaacgccgacttcgac
ggcgaccagatggccgttcacgtgccgctgtcggtggaagcgcaaatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggcgaaccgtcgatcgttcct
tcgcaggacgtggtgctgggtctgtactacacgacccgcgaccgcatcaacggcaagggc
gagggcctgatcttctccgacatcggtgaactgcagcgcgcgctcgacgccaacgaagtc
gaactcaccgccaaggtggcagtgcgcatcacggaatacaccaagaacaaggaaaccggc
gaattcacgccgtcgacctcgctcgtggacaccaccgtgggccgtgccctgctgtccgag
atcctgcccaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgtctcgttccgcaagtgcggcctgaaagagaccgtcgtgttcgcc
gacaagctgctgcaaaacggcttccgcctggcgaccaaggccggtatctcgatcgccatc
gacgacatgctggtgcccgccgagaagcacggcatcatcgagcgctccgccaaggaagtg
aaggagatcgagcagcagtacgtgtcgggtctggtgacctccggcgaacgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtcgaaggtcatgatggccaagctg
tcgaagcaacgcgtcatcgaccgccatggcaaggaagtcgagcaggagtccttcaactcg
atctacatgatggccgactcgggcgcccgcggttccgcggcccagattcgccaggtggcc
ggtatgcggggcctgatggccaagccggacggctcgatcatcgagacgcccattaccgcg
aacttccgcgaaggcctgaacgtgctggagtacttcatctccacccacggtgcccgtaag
ggtctggccgacacggcgctgaagacggcgaactcgggctacctgacccgtcgtctggtc
gacgtgacgcaagacctggtcgtgaccgagcaggactgcggcacgcacggcggctacctg
atgcgcgccatcgtcgaaggcggtgaagtgatcgagtcgctgcgcgaccgtatccttggc
cgctcggctgcggacgacgtgctgcacccggaaaaccgctcggtgctgctgaaggccggc
gagatgttcgacgaagacaacatcgaagcgctggaagcgcaaggcgtcgacgaggtcaag
gtccgcaccgcgctgacctgcgaaacccgcttcggcatctgcgcgacctgctacggccgc
gacctgggccgcggcggcctgatcaacatcggcgaagccgtcggtgtgatcgccgctcag
tccatcggcgaacccggcacgcagctgacgatgcgtaccttccacatcggtggtgccgct
tcgcgcgctgccatcgcttcgagcgtggaagccaagtcgaacggctcgatcggcttcaac
gccacgatgcgctacgtgaccaacagcaagggcgaactggtcgtgatttcgcgttcgggc
gagatcgtcatccatgacgagcacggccgtgagcgcgaacgccacaaggtgccgtacggc
gcgaccctgacggtcaaggccgaccagcagatcaaggccggccacgtgcttgccaactgg
gatccgctgacgcgcccgatcattaccgagttcgccggcaagacgcagttcgaaaacgtc
gaggaaggcctcacggttgccaagcaggtggacgaagtgaccggtctgtcgaccctggtc
gtgatcgacccgaagcgccgcggcgctgccaaggtcgtgcgcccgcaggtgaagctcatc
gacgcctccggcgccgaagtgaagatcccgggcaccgaccactcggtgacgatcggcttc
ccgatcggcgctctggtgcagatccgtgacggtcaggacgtgggccccggcgaagtgctg
gcgcgtattccggtcgaaggccagaagacccgcgacattaccggcggtctgccgcgcgtt
gccgagctgttcgaagcccgttcgccgaaggacaagggcatgctggccgaaatgaccggc
accgtgtcgttcggcaaggaaacgaagggcaagatccgcctgcagatcaccgatccggaa
ggcacggtctgggaagacctcgtgccgaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgaatccgtggtcgacggcccggcggacccgcaggacatcctgcgc
ctgctgggttcggaagaactggcgcgctacatcgtggacgaagtgcaggacgtgtaccgc
ctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgacaacatcggcgacacgagctacatctccggcgaacaggtcgaacgc
agcgaaatgctcaacaccaacgacgccctgcgcgccgacggcaagatccccgcgacgttc
accaacctgctgctgggtatcacgaaggcgtcgctgtcgaccgactcgttcatctcggct
gcttcgttccaggaaacgacgcgcgtactgaccgaagccgcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaatgtcattgtcggccgcctgatccccgcaggcaccggc
atggcctaccaccaggcccgcaaggtcaaggacgccatggacgaagccgagcgccgtgcc
atcgccgaatcggaagctgccgaactggcaggctccgccgaaagcgatgcagcggccagc
acggctgacgccagcgaaggcgccgcgaccgaataa
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integrated database retrieval system
