KEGG   Variovorax sp. YR566: ACTG4X_15825
Entry
ACTG4X_15825      CDS       T11729                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vay  Variovorax sp. YR566
Pathway
vay03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vay00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACTG4X_15825 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vay03021]
    ACTG4X_15825 (rho)
   03019 Messenger RNA biogenesis [BR:vay03019]
    ACTG4X_15825 (rho)
Transcription machinery [BR:vay03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACTG4X_15825 (rho)
Messenger RNA biogenesis [BR:vay03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACTG4X_15825 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA S1CSD-TOTE-2 Spore_III_AA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: XYV79498
LinkDB
Position
complement(3393194..3394459)
AA seq 421 aa
MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
DGPPEQNKHKVMFENLTPLFPKEQMKLERDGVKGEENITGRIIDIIAPIGKGQRALLVAP
PKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARH
VHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKR
FLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQ
LNRSGTRREELLLAPEILQKTRILRQLMYNMDEIESMELMLKNMKATKTNVEFFDMMRRG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcacttaaacgaactcaaggcactccacgtgtctgaagtcctcaagcaggctgaagcg
cttgagatcgaaaacgtcggccgcatgcgcaagcaggagctgatgttcgcgatcatcaag
aagcgcgcaaaagccggcgagcaggtcttcgccgacggtgtgctcgaaatactgcccgac
ggcttcggcttcctgcgcagccccgacaccagcttcacggccagcacggacgacatctac
atctcgcccagccaggtgcgtcgcttcaacctgcacaccggcgacatgatcgaaggcgaa
gtgcgcacgcccaaggacggcgagcgctatttcgcactgaccaagctcgacaaggtcaac
gacggtccgccggagcagaacaagcacaaggtgatgttcgaaaacctgacgccgctgttc
cccaaggagcagatgaagctggaacgcgacggcgtcaagggcgaagagaacatcacgggc
cgcatcatcgacatcatcgcccccatcggcaaaggccagcgcgccctgctcgtggcgccg
cccaagagcggcaagacggtgatgatgcagcacatcgcccacgcgatcagtgccaactac
cccgacgttcacatgatggtgctgctcgtcgacgagcgccctgaagaagtgaccgaaatg
cagcgcacggtgaagggtgaagtcattgcttcgaccttcgacgagcccgctgcgcgccat
gtgcacgtcgccgaaatggtgatcgagcgcgccaagcgcctggtcgaactcaagaaggac
gtggtgatcctgctcgactcgatcacccgcctggcccgcgcctacaacaacgtcgtgccc
tcgtcgggcaaggtgctgacgggcggtgtcgattccaacgcgctgcagcgccccaagcgc
ttcctgggcgccgcgcggaacgtggaagaaggcggctcgctgaccatcatcggcaccgcg
ctgatcgataccggcagccgcatggacgaggtgatcttcgaagagttcaagggcaccggc
aactccgaaatccacctcgaccgccgcctgtacgaaaagcgcgtgttcccctcgatccag
ctcaatcgcagcggcacccgccgcgaagaactgctgctggctcccgagatcctgcagaag
acccgcatcctgcgtcagctcatgtacaacatggacgagatcgagtcgatggagctgatg
ctcaagaacatgaaggcgacgaagaccaatgtcgagttcttcgacatgatgcgtcgcggc
ggctga

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