Variovorax sp. YR566: ACTG4X_18985
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Entry
ACTG4X_18985 CDS
T11729
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
Organism
vay Variovorax sp. YR566
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
XYV73598
LinkDB
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Position
complement(4050256..4052355)
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AA seq
699 aa
AA seq
DB search
MTTRDEAAREAAALSEQLHRHAHLYYVLDTPELPDAEYDKLFQRLQAIEAEYPDLRTPDS
PTQRVGGKVLDGFVKVRHKVPMLSIRTETDITPGGASAFDARVRKELGLPEDGPQVSYVC
ELKFDGLAMNLRYENGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLNGTAPPVVEVRGE
VYMKRADFDALNERQRQKIADGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGL
GEVTPAAEGGPDCPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYD
IDGVVYKVDSIELQRQLGFVSREPRWAVAHKYPAQEQLTEVVGIEIQVGRTGKLTPVAKL
APVFVGGVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPEGERG
AQFTMPHKCPVCDSEAVREEGEVDYRCTGGLFCAAQRKEAILHFAARRAVDVDGLGDKLV
EQLVDANLIRTLPDLYKLGFTTLAGLERMAEKSAKNLVDALEASKKTTLPRFLFGLGIRH
VGETTAKDLAKHFGKLDAIMDATEEQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRAC
GLTWEEGEPATRAPKPLAGLTFVITGTLPTLSRDEAKDKLEAAGAKVSGSVSKKTHYLVA
GEEAGSKLDKARENGVEIIDEARMLEILANGVPAEDAGE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgcgcgacgaagcggcacgcgaagccgccgcactgagcgaacagcttcaccgg
cacgcccacctctactacgtgctcgacacgcccgagctgccggacgcggagtacgacaag
ctcttccagcgcctgcaggccatcgaggccgagtaccccgacctgcgcacgcccgattcg
ccgacgcagcgcgtgggcggcaaggtgctcgacggtttcgtcaaggtgcgccacaaggtg
ccgatgctgtcgatccgtaccgagaccgacatcacgcccggcggcgcgagcgccttcgat
gcgcgcgtgcgcaaggaactgggcttgcccgaggacgggccgcaggtcagctatgtctgc
gagctgaagttcgatggcctagccatgaacctgcgctacgagaacggcgtgctggtgcag
gctgccacgcgcggcgacggcgaggtgggggaagacgtcacgcagaacatccgcaccgtg
cgcgagatccctctgcggctcaacggcacggcgccgcccgtggtcgaagtgcgcggcgag
gtctacatgaagcgtgccgatttcgacgcgctcaacgagcgccagcgccagaagattgcg
gacgggcagaagaacgagaaggtgttcgtcaatccacgcaacgccgcggctggcgcggtg
cgtcagctcgatccggcgattgccgcggcgcggcccctgagcttctttgcctacgggctg
ggcgaggtcacgccggcggccgaaggcgggccagattgcccgacgcagttcgactggctg
cagcagttccacgcatggggcttccctgtggcgacgcagacggcacgagctacgggtgct
atcgaactcatagcattccacgaaaacatcgggcgccagcgcgatgccttgccctacgac
atcgacggcgttgtctacaaggtcgacagcatcgagttgcagcggcaactgggctttgtc
tcacgcgagccgcgctgggccgtggcccacaagtacccggcccaggagcagctgaccgaa
gtggtcggcatcgagatccaggtcgggcgcaccggcaagctcacgccggtggccaagctc
gcgccggtattcgtcggcggcgtgaccgtgacgaacgccacgctgcacaacgaagacgaa
gcgcgccgcaaggatgtgcgcgtaggcgacacggtgatcgtgcgtcgcgccggcgacgtg
attcccgaagtggtcggggtggtgcccgaaagcctcgcaaagcccgagggcgagcgcggt
gcgcagttcaccatgccgcacaaatgtcctgtgtgcgattcggaggccgtgcgcgaagag
ggcgaggtcgactaccgctgcactggcggcctgttctgtgcggcgcagcgcaaggaagcc
atcctgcacttcgcggcgcggcgtgcggtcgacgtcgacggccttggcgacaagctggtc
gagcaactggtcgatgccaacctgatccgcaccttgcccgatctctacaagctgggcttc
accacgctggccgggctggagcgcatggccgagaagtcggcgaagaacctcgtcgatgcg
ctcgaagcctcgaagaagaccacgctgccgcgcttcctgttcggccttggcattcgccac
gtgggcgagaccaccgcgaaagacctggccaagcacttcggcaagctcgacgcgatcatg
gacgcgaccgaagagcaattgctcgaagtgaatgacgttggcccggtggtggcgcaaagc
ctgcgcaccttcttcgaccagccgcacaaccgcgaagtggtcgagcagctgcgcgcctgc
ggactgacatgggaagagggcgagccggccacgcgtgccccgaagcctttggcgggcctg
accttcgtcatcaccggtacccttcctacgctgagccgcgacgaagcgaaggataaattg
gaggcggccggtgccaaggtttccggctccgtcagcaagaaaacccattacctcgtggcc
ggggaagaggccgggagcaagctcgacaaggcacgtgagaacggagtcgagatcatcgac
gaggcgcgtatgctggagatactcgccaacggtgtcccggcagaagacgcgggcgagtga
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