Variovorax sp. PAMC26660: H7F35_06845
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Entry
H7F35_06845 CDS
T10234
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vaz Variovorax sp. PAMC26660
Brite
KEGG Orthology (KO) [BR:
vaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vaz03016
]
H7F35_06845
Enzymes [BR:
vaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H7F35_06845
Transfer RNA biogenesis [BR:
vaz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H7F35_06845
Prokaryotic type
tRNA splicing ligases
H7F35_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QNK69412
LinkDB
All DBs
Position
complement(1424576..1425796)
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AA seq
406 aa
AA seq
DB search
MTNYKVHEVANGVLVKMWTNGVPVEDEAQKQLENAARLPIVFKHIAAMPDVHYGIGATVG
SVIPTFKAIIPAAVGVDIGCGMMACKTTLNARDLPDNLGPLRSAIEKAVPHGSNPKRMGR
DKGSWETPPDETDAAWAQLVDEFDAICEDYPRIKNTNNHKHLGTLGTGNHFIEVCLDEAG
AVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDQDLAYFEEGAKYFGDYVRAVGW
AQKFARANREVMMQRVVAAARKVITKPFEAHVEAVNCHHNYVSREMHFGEDVLVTRKGAV
SAKAGELGIIPGSMGAKSYIVRGKGNPESFMSCSHGAGRKMSRTKAKKLFTVADQIAATE
GVECRKDADVIDEIPMAYKDIDAVMAAQEDLVEVVYTLKQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacgaactacaaagtacatgaagtagccaacggcgtcctcgtgaagatgtggaccaat
ggcgtgcccgtcgaagacgaagcgcaaaagcagctcgagaatgcagcccgcctgcccatc
gtgttcaagcacatcgcggccatgcccgacgtgcactacggcatcggcgcgaccgtgggc
tcggtgatcccgaccttcaaggccatcattcccgccgcggtgggcgtggacatcggttgc
ggaatgatggcgtgcaagaccacgctcaacgcacgcgacctgcccgataacctgggcccg
ctgcgttccgcgatcgagaaggccgtgccgcacggatcgaaccccaagcgcatgggccgc
gacaagggctcgtgggaaacgccgcccgacgaaaccgatgcggcctgggcccaactggtg
gatgagttcgatgcaatctgcgaggactacccgcgcatcaagaacacgaacaaccacaag
cacctgggaacgctgggaaccgggaatcacttcatcgaggtgtgcctcgacgaagcgggc
gccgtgtggttcatgctgcactcgggttcgcgtggcgtgggcaatgccatcggtacgcac
ttcatcgaactcgcgaagaaagatgccgagctgcaccagcgcaacctgcccgatcaggac
ctggcgtacttcgaggaaggcgccaagtacttcggtgactacgtgcgtgcggtgggttgg
gcccagaagttcgcgcgtgccaaccgcgaagtgatgatgcagcgcgtggtcgcggccgcg
cgcaaggtcatcaccaagcccttcgaggcgcatgtggaagcggtgaactgccaccacaac
tacgtgagccgcgaaatgcacttcggcgaagacgtgctcgtgacccgcaagggcgcggtg
agcgccaaggccggcgagctggggatcatccccggcagcatgggtgccaagagctacatc
gtgcgcggaaagggcaaccccgagagcttcatgagctgcagccacggcgccggtcgaaag
atgagccgtaccaaggcgaagaagctcttcaccgtcgccgaccagatcgccgcgaccgaa
ggcgtggaatgccgaaaagacgccgatgtgatcgacgagattccgatggcctacaaggac
atcgacgcggtgatggcggcgcaggaggacctggtggaggtggtttacacgctcaagcag
gtggtgtgtgtgaagggttga
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