Variovorax sp. PAMC26660: H7F35_12360
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Entry
H7F35_12360 CDS
T10234
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vaz Variovorax sp. PAMC26660
Brite
KEGG Orthology (KO) [BR:
vaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vaz03000
]
H7F35_12360
Transcription factors [BR:
vaz03000
]
Prokaryotic type
Helix-turn-helix
Other families
H7F35_12360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
Mg_chelatase
AAA
HTH_23
AAA_5
HTH_IclR
HTH_AraC
HTH_1
AAA_2
HTH_28
HTH_29
HTH_17
DUF815
AAA_7
HTH_50
Motif
Other DBs
NCBI-ProteinID:
QNK70421
LinkDB
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Position
complement(2557043..2558971)
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AA seq
642 aa
AA seq
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MTSLQSRHIDNVYSIATGTALADPATSLVHKSWARCVRDHGLDPSKPTPARILPAQEVRA
HQQQLEHFLRAARAGMEDIYRRVADLGYMVLLTDAEGITVDYIGNPAWDDQLRKAGLYLG
ADWNEAHAGTCGVGTCLVERQPMTCHQTEHFDATHIALTCTTAPLFDHSGKLTAILDVSA
LRSPEARESQHLVRHLVSIYARMIEDADFLRNFRGHWILRLGSAYGLVDVAGEVMLAFDD
SGAVVGANGGARRAFSDAQTPLLGGAVSQLLHMPMDAIWRIGAGASSAMPFAHTVLLPGG
GEYHASLLAPRVRRSPTTATALTSTKPSDRLPPLDRIAGDDPAMQKLLAQARRLVDRGIH
VLVEGETGSGKEVLARAMHGQSSRAAMPFVAVNCAAIPDSLIESELFGYTPGSFTGGRAK
GMKGLIAQADRGTLFLDEIGDMPMALQTRLLRVLSEGEVLPLGAESPQRVDIAVVAATHR
HLPELVAAGRFREDLYYRLCGAVLKLPPLRDRGDRRYLIEVMFNEEAAAMRSTARLSDAA
MQRLLAHDWPGNLRELRNVLRLSLALCTGSTVATQDLQLQPRPMQSADTAVDEDPFDESG
RLLDALKRHRWHVARAADELGLSRATAYRQMKRQGIVAPRRG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgacttccctgcaatcgcgtcacatcgacaacgtctattcgatcgccaccggcacggcg
ctggccgatccggcgacgagcctggtccacaagtcgtgggcgcgctgcgtgcgcgaccac
gggctcgatccgtcgaagccaacacccgcgcgcatcctgccggcgcaggaggtccgcgcg
caccagcagcagctcgaacacttcctgcgggccgcgcgtgcgggcatggaagacatctac
cgccgcgtggccgacctgggctacatggtgctgctgaccgacgccgaaggcatcaccgtc
gactacatcggcaacccggcctgggacgaccagttgcgcaaggccggcctgtaccttggt
gccgactggaacgaagcccatgccggcacctgcggcgtgggcacctgcctggtcgagcgg
cagccgatgacctgccaccagaccgagcacttcgatgccacgcacatcgcgctcacctgc
accaccgcgccgctgttcgaccacagcggcaagctcacggccatcctcgatgtgtcggcg
ctgcgctcgcccgaggcgcgggaaagccagcatctcgtgaggcacctcgtatcgatctac
gcgcggatgatcgaagacgccgatttcctgcgcaactttcgcggccactggatcctgcgg
ctgggcagcgcgtacgggctggtcgatgtggcgggcgaggtgatgctggcgttcgacgac
agtggcgcggtggtcggcgccaatggcggtgcgcgacgggcgttcagtgatgcgcagacg
ccgctgctgggcggcgcggtgtcgcaactgctgcacatgccgatggacgccatctggcgc
atcggtgccggcgcctcgtcggccatgcctttcgcgcacacggtgctgttgcccggcggc
ggcgagtaccacgcctcgctgctggcgccgcgcgtgcggcgttcgccgacgacggccacc
gctctcacttccaccaagccctccgaccgcctgccgccgctcgaccgtatcgcgggcgac
gaccctgcgatgcagaagctgctcgcgcaggcgcgccggctggtggaccggggcatccat
gtgctggtcgaaggcgagaccggcagcggcaaggaagtgctggcgcgcgcgatgcacggc
cagagcagccgcgcggcgatgcccttcgtggcagtgaactgcgcggccattcccgattcg
ctgatcgagagcgagctgttcggctacacgcccggcagcttcaccggcggccgcgccaag
ggcatgaagggcctgatcgcgcaggccgaccggggcacgctgtttctcgacgagatcggc
gacatgccgatggcgctgcagacgcggctgctgcgcgtgctgtctgaaggcgaggtgctg
ccgttgggtgcggagtcgccgcagcgcgtggacatcgcggtggtggcggccacgcatcgg
catctgccggagctggtggctgcggggcgctttcgtgaagacctgtattaccggttgtgc
ggcgcggtgctgaagctgccgcccttgcgtgatcgcggcgacaggcgctacctgatcgag
gtcatgttcaacgaggaggcggctgcgatgcgctcgacggcgcggctgtccgatgcggcg
atgcaaaggctgctggcacacgactggccgggcaacctgcgtgagttgcgcaatgtgctg
cggctgtcgctggcgttgtgcacggggtcgactgtggcaacgcaggatctgcaattgcag
ccgcggccgatgcaaagcgccgacacggcggtcgacgaagaccctttcgatgaatccggc
cgcctgctcgacgcgctcaaacgccatcgctggcacgtcgcacgcgcggccgacgaactc
ggcttgagccgtgcgaccgcctaccgccaaatgaagcgccagggcatcgtggcgccgcgt
cgagggtaa
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