KEGG   Variovorax sp. PAMC26660: H7F35_15095
Entry
H7F35_15095       CDS       T10234                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vaz  Variovorax sp. PAMC26660
Pathway
vaz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vaz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H7F35_15095 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vaz03400]
    H7F35_15095 (ligD)
Enzymes [BR:vaz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H7F35_15095 (ligD)
DNA repair and recombination proteins [BR:vaz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H7F35_15095 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DUF1254
Other DBs
NCBI-ProteinID: QNK70923
UniProt: A0A7G8VS30
LinkDB
Position
3144886..3147408
AA seq 840 aa
MGTTASTARKALARYHGKRDFSRTPEPRTGGSTGKRVLSFVIQKHHASHLHYDFRLELDG
TLKSWAVPKGPCLDPTVKRMAVHVEDHPISYADFEGTIPPKQYGAGTVIVWDRGDWLPDG
DARKALAAGKLKFELRGEKLNGHWTLVRMHGKGDEKHEPWLLIKERDGEARALADYDVLE
EQPSSVLTGRGVDEVSSPPKKVAAKAPAKKAAAKKPANKPATKTALPATLQPQLATLAAS
PPASPDDWLYELKFDGYRLLTRIEKGKVRCFTRNGHDWTAKLPTLAKALAQLPTDSAWLD
GEITVEGENGAPDFQALQNAFDSGATSSIVYWLFDAPFLDGDDLRDAPVEVRRAQLARLL
GKKPPAPLRLSDTFDASPHDLLASSARIGFEGIVGKRKGSAYVSRRSPDWIKLKNQQRQE
FVIGGYTAPKGSRAGFGALLLGVHDEATGRLRYCGNVGTGFDAGRLVDIKARLDKLATDD
CPFAPIPRGVKARWVQPTLVAEVSFGEWTREDRVRQAVFQGLRADKPAREIQRERAQPAK
KKKGPATAMAQKITHADRVIDAQSGITKGELATYYESVAKLILPHLRGRPVSLVRAPEGV
GGELFFQKHVQGREIPGVHLLDPALDPGHEPLLQIDTKQGLLGAAQMNVIELHTWNATSR
AIGKPDRMTFDLDPGEGVAWPQIQEAALLVRTLLDELGLPSFLKTSGGKGLHVVVPIRRR
YDWDTVKGFSQAVVAHLAQTIPERFVAKSGPRNRVGKVFVDYLRNGFGATTVSAWSARSR
PGLGVSVPLGWDELPALTSAAQWTVTNVGERFEIGNKPWAAMERSREGLAAAMKTLGYNK
NT seq 2523 nt   +upstreamnt  +downstreamnt
atgggcaccaccgcatcgaccgcgcgcaaggcactggcgcgctaccacggcaagcgcgat
ttctcgcgcacgccggagccccgaacgggcggcagcacgggcaagcgcgtgctgtccttc
gtcatccagaagcaccacgcgagccacctgcactacgacttccggctcgaactcgacggc
acgctcaagagttgggccgtgcccaaggggccttgccttgatccgacggtgaaacgcatg
gccgtgcacgtggaagaccatccgatctcgtacgcggatttcgagggcaccatcccgccg
aagcagtacggcgccggcaccgtgatcgtctgggaccgcggcgactggctgcccgatggc
gatgcgcgcaaggcactcgcggccggcaagctcaagttcgagctgcgcggcgagaagctg
aatggccactggacactggtgcgcatgcacggcaagggcgatgaaaagcacgagccgtgg
ctgctcatcaaggagcgtgacggcgaggcgcgtgcgctcgccgactacgacgtgctcgaa
gaacagccctcgagcgtgctgaccgggcgcggcgtggacgaggtgagcagtcctccgaag
aaagtggcggccaaggcgcccgccaagaaggcagcggcaaagaagccagcaaacaagcct
gcaacaaagaccgcgctgcccgcgaccctgcagccccaactcgccaccttggccgcgtca
ccgccggcctcgcccgacgactggctctacgaactcaagttcgacggctaccgcctgctc
acgcgcatcgagaaaggcaaggtccgctgcttcacccgcaacggccacgactggaccgcg
aagctgcccacgctggcgaaggcattggcccagctccccaccgactcggcctggctcgac
ggcgagatcacggtcgagggcgagaacggcgcgcccgacttccaggcgctgcagaacgcc
ttcgacagcggcgcgacgtcgtccatcgtctattggctgttcgacgcgccctttctcgat
ggcgatgacttgcgtgatgcgccggtcgaagtgcggcgcgcgcagctcgcccgcctgctc
ggcaagaagccacccgcgccactgcgcctgagcgataccttcgacgcttcgccgcacgac
ctgctcgcgtcgtccgcacgcatcggcttcgagggcatcgtcggcaagcgcaagggctcg
gcctatgtgtcgcgtcgctcgcccgactggatcaagctcaagaaccagcagcggcaggag
ttcgtgatcggcggctacacggcgcccaagggatcgcgtgcgggcttcggcgctttgctg
ctgggtgtgcacgatgaagctaccgggcgcctgcgttactgcggcaacgtgggcacgggc
ttcgatgccggccggcttgtcgatatcaaggccaggctcgacaagctggccaccgacgac
tgccccttcgcgccgataccgcgcggcgtgaaggcccggtgggtccaacccacgctggtg
gccgaggtgtccttcggcgaatggacgcgcgaagaccgcgtgcgccaggcggtgttccag
gggctgcgcgccgacaagccggcgcgcgagatccagcgtgagcgagcgcagccagcaaag
aagaagaaaggacccgcgaccgccatggctcaaaaaatcactcatgccgaccgcgtgatc
gacgcgcaaagcggcatcaccaagggcgaactcgcgacctactacgagagcgtcgccaag
ctcatactgccgcatctgcgcggccggcccgtgtcgctggtgcgtgcaccggaaggcgtg
ggcggagagttgttcttccagaagcacgtgcagggccgcgagattcccggcgtgcacctg
ctcgatcccgcgctcgatccgggccacgagccgctgctgcagatcgacacgaagcagggt
ctgctcggcgccgcgcagatgaatgtgatcgaactgcacacctggaacgcgacttcgcgc
gccatcggcaagcccgaccgcatgaccttcgacctcgaccccggcgaaggcgtggcgtgg
ccgcagatccaggaagccgctttgctggtgcgtacgctgctcgacgaactgggcctgccg
tccttcctcaagaccagcggcggcaagggcctgcatgtggtcgtgccgatccggcggcgg
tacgactgggacaccgtcaagggcttctcgcaggccgtggtggcgcatctggcgcagacg
attccggagcgcttcgtcgccaagagcgggccgcgcaatcgcgtggggaaggtctttgtc
gactacctgcgcaacggcttcggtgccaccaccgtcagcgcatggtcggcgcgttcgcgg
ccggggcttggtgtgtcggtgccgctggggtgggacgaattgcctgcgttgaccagcgcc
gcgcagtggaccgtgaccaacgtgggcgagcgcttcgagatcggcaacaagccctgggcc
gcgatggagcgcagccgcgaggggctggccgctgcgatgaagacgctgggctacaacaag
tag

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