Variovorax sp. PAMC26660: H7F35_17025
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Entry
H7F35_17025 CDS
T10234
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
vaz Variovorax sp. PAMC26660
Pathway
vaz02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vaz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H7F35_17025
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vaz02022
]
H7F35_17025
02035 Bacterial motility proteins [BR:
vaz02035
]
H7F35_17025
Two-component system [BR:
vaz02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
H7F35_17025
Bacterial motility proteins [BR:
vaz02035
]
Pilus system
Twitching motility proteins
H7F35_17025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA
HTH_23
HTH_28
HTH_30
AAA_16
HTH_50
AAA_3
Motif
Other DBs
NCBI-ProteinID:
QNK71612
LinkDB
All DBs
Position
complement(3583492..3584997)
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AA seq
501 aa
AA seq
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MDDEPDLRTLYELTLLREGYRVEAAGSVSEAWQHLEAGRFDAVITDMRLPDGQGMEIIHR
IQRDQRSERCVVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRAVVASAVQARQASPLP
PARAVRTTPASSETPLVTTGSGAAALDRLVGDSEPMRLVKSRIAKVARGMAPVLVRGESG
TGKELVARAVHACSQRSDGPFVAVNCGAIPENLLEAEFFGAKKGSYTGSAQDRDGYFQAA
RGGTLFLDEIGDLPLAMQSKLLRAIQERSVRSIGSTQEDAVDVRIVSATHKDLHAEVQAA
RFRQDLFYRLNVIEIAVPALRERREDLPALCTALLARIAQDGGLPVPHLSTELLRRLALH
PLDGNVRELENLLHRAVALNDGDELQLDLMSAAATAAAAAEAAATGPSPLSPAGDLPVAT
APVAPVAEPKLAAPPLPSDLQAYLDQQEREILVRALHESGFNRTAAAARLGMSLRQIRYR
IARLGITTPNGDDGASSHADD
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atcgacgacgaacccgacctgcgcacgctctatgagctgacgctgctgcgcgagggttat
cgcgtcgaagccgcgggcagcgtgtccgaagcctggcagcacctcgaagccggccgcttc
gacgcggtgatcaccgacatgcggctgcccgacgggcagggcatggaaatcatccatcgc
atccagagagaccagcgcagcgagcgctgcgtcgtcatgaccgcctacggctcggccgaa
aacgcggtcgaggcgctgaaggcgggcgccttcgactacctcacgaagcctgtcgacctg
aagcagttccgcgccgttgtcgcctctgccgtgcaggcgcggcaggcgtcgccgctgccg
ccggcccgcgccgtgcggacaaccccggcaagcagcgagacaccgctggtgaccacgggc
agcggcgctgctgcgctcgaccggctggtgggcgattcggaacccatgcgcctggtcaag
tcgcgcatcgcgaaagtggcgcgcggcatggcgccggtgctggtgcgcggcgaatcgggc
acgggcaaggaactggtggcgcgtgcggtgcacgcctgcagccaacgcagcgacgggcct
tttgtcgcggtcaactgcggcgcgattcccgagaacctgctcgaagccgaattctttggc
gccaagaagggctcgtacaccggctcggcgcaagaccgcgacggctatttccaggccgca
cgcggcggcaccttgttcctcgacgaaatcggcgacctgccgctggccatgcagtcgaag
ctgctgcgcgccatccaggagcgcagcgtgcgctcgatcggctcgacgcaggaagacgcg
gtcgatgtacgcatcgtgagcgccacgcacaaggacctgcacgccgaggtgcaggccgcg
cgcttccggcaagaccttttctaccgcctcaacgtgatcgagatcgcggtgcccgcgctg
cgcgagcgccgcgaagacctgcccgcgctgtgcactgccctgctcgcgcgcatcgcgcaa
gacggcggcttgcccgtgccgcacctgtcgaccgaattgctgcgccggctggcgctgcac
ccgctcgacggcaatgtgcgcgagcttgaaaacctgctgcaccgcgcggtcgcgctcaac
gacggcgacgaactgcagctcgacctgatgagcgctgccgccacggcagcggctgccgca
gaagccgccgccacaggaccttccccgctgtcgcccgccggcgatctgcccgttgccacc
gctcccgttgcgcctgtcgcagaacccaagcttgccgcgcccccattgccctccgatctg
caggcttacctcgaccagcaggagcgcgaaatcctcgtgcgcgcgctgcacgaaagcggc
ttcaaccgcacggcagccgccgcgcggctcggcatgagcctgcgccagatccgctaccgc
atcgcccggctgggcatcaccacgcccaacggcgacgatggcgccagcagccatgccgac
gactga
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