Variovorax sp. PAMC26660: H7F35_20435
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Entry
H7F35_20435 CDS
T10234
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vaz Variovorax sp. PAMC26660
Pathway
vaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7F35_20435 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaz03019
]
H7F35_20435 (pcnB)
Enzymes [BR:
vaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
H7F35_20435 (pcnB)
Messenger RNA biogenesis [BR:
vaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H7F35_20435 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Plasmid_RAQPRD
DUF3010
Motif
Other DBs
NCBI-ProteinID:
QNK65580
UniProt:
A0A7G8VBT7
LinkDB
All DBs
Position
4368642..4370270
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AA seq
542 aa
AA seq
DB search
MIKKFIDKLLGKTAGSTQGKSRFGKRQEVPAEVHKIDPALVDERAKNVVTTLQQAGYEAY
VVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFIIGRRFRIVHVVYGRGREHEVIE
VSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVDASGRVLRDNVWGPQEEDAARRDFTV
NAMYYDPANQVVVDYHNGIKDAQKLTLRMIGDPATRYREDPVRIIRAIRFSAKLAALGFK
MEAKTAAPLIESSKLLADVPQSRLFDEMLKLLQTGHAIATVEQLNKLGLAKGIYPLLDVV
VERADQPFVKAALQDTDRRVGEGKPVAPSFLLACVLWADVRDGWAQRQEGQRGQRPQAPF
PALQDAIDDVFNARIGDVSGRGKLAADMREIWMMQPRFDKRTGSTPYSLVEQARFRAAFD
FMRLRADVGEVSEAIAEWWQEFSTADDLRRQDLLEQVREEQKVRQRVRVRDPAPAKPRNE
PAARPQSRDDQDSEQDDEVEVEAGAVPPDGEAAAPRKRRRRRNKPRPGGGSSSEGGGSAA
AE
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaattcatcgacaagctgctcggcaagaccgccggcagcacacagggcaag
agccgcttcggcaagcgccaggaggtgccggcagaggttcacaagatcgatccggccctg
gtcgacgaacgcgcgaaaaatgtggtcaccacgctgcagcaggcggggtacgaggcctat
gtggtgggtggcgcggtgcgcgacctgctgctggggctgcgccccaaagacttcgacgtg
gccaccaacgccacgcccgagcaggtcaaatcgctgtttcgccgcgccttcatcatcgga
cggcgctttcgcatcgtgcacgtggtgtacggccgtggtcgcgagcatgaggtgatcgag
gtctcgaccttccgcgcctacatggacaacgccgccgccgagcaggtggcgggcaatgag
cgcaccagcaagggcgagcttgcgagcatgaagcacgccgtcgacgccagcggccgcgtg
ctgcgcgacaacgtctggggtccgcaggaggaagacgcggcgcgccgcgacttcaccgtc
aacgccatgtactacgacccggccaaccaggtcgtggtcgactatcacaacggcatcaag
gacgcccagaagctcacgctgcgcatgatcggcgacccggccacgcgctaccgcgaagat
ccggtgcgcatcattcgcgcgatccgcttctcggccaagctcgcggcccttggcttcaag
atggaagccaagacggcggcgccgctgatcgagtcgagcaagctgctggccgacgtgccg
caaagtcgtttgttcgacgaaatgctcaagttgttgcagaccggccatgcaattgccacg
gtcgagcaactgaacaagttggggctggccaagggcatctacccgctgctcgacgtggtg
gtcgagcgtgccgaccagcccttcgtgaaggcggccctgcaggacaccgaccgccgcgtg
ggcgaaggcaagcccgtggcgcccagcttcctgctggcctgcgtgctgtgggccgacgtg
cgcgatggctgggcccagcgccaggaaggccagcgcggccagcgcccgcaggcgccgttc
ccggcgctgcaggacgccatcgacgacgtgttcaatgcgcgcatcggcgacgtgtcgggc
cgcggcaagctggccgcagacatgcgcgagatctggatgatgcagccgcgcttcgacaag
cgcactggctccacgccctacagcctcgtcgagcaggcgcgctttcgtgccgccttcgac
ttcatgcggctgcgggccgatgtgggcgaggtcagcgaggccattgccgagtggtggcaa
gagttcagcaccgccgacgacctgcgccgccaggacctgctggagcaggtgcgtgaagag
cagaaggtgcgccagcgcgtgcgtgtgcgcgaccccgcgccggcaaaaccacgcaatgag
ccggccgcacgtccgcagagccgggatgaccaggattccgagcaggacgacgaggttgaa
gtcgaggctggcgccgtgccgcccgatggcgaggccgcggcgccgcgcaagcgccggcgt
cgtcgcaacaaaccgcgccccggtggcggcagcagcagtgagggcggcgggagcgccgcg
gccgaatga
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