Variovorax sp. PAMC26660: H7F35_24855
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Entry
H7F35_24855 CDS
T10234
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vaz Variovorax sp. PAMC26660
Brite
KEGG Orthology (KO) [BR:
vaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vaz03000
]
H7F35_24855
Transcription factors [BR:
vaz03000
]
Prokaryotic type
Helix-turn-helix
Other families
H7F35_24855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
GAF
Sigma54_activ_2
AAA_2
HTH_8
AAA_5
Mg_chelatase
HTH_30
HTH_23
HTH_29
HTH_38
HTH_28
IclR_C
PAS_8
HTH_17
HTH_11
Xre-like-HTH
AAA_16
HTH_22
Motif
Other DBs
NCBI-ProteinID:
QNK66402
LinkDB
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Position
complement(5267673..5269607)
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AA seq
644 aa
AA seq
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MSEAQLPSVRVAQARELFFGQGRDPAPWITPHISRSWQRSRPIDAQYIDPEPMALALLSE
RREQAMRLLNCAQPELDGLAEHAVGNGCVVILSDASGLILEEIGSPDFLPKAERIALQPG
VAWSENHRGTNAIGTALAEREALMVLGGEHYLAQNGALGCAAAPIFTGRGELAGALDISG
ETARVNHHALGLVRMAAQQVEHRMMLAEASGHVLRFHARPALIGTAREGLMVIEGGRIVA
ANRVALELFDRSWEGLLDLDAQDFLGANWPRMEHRRSLLTLPGGRQIATVMERSTAPGGS
RTAGRRTHAPTGTAAAPEADDVLPLLERAVRVLNEGVPVLVNGETGSGKEVFSRRLHAAS
RRSTGPFVAVDCASLPETLIESELFGYEEGAFTGAKRKGMAGRIREAHGGVLFLDEIAEI
PLALQTRLLRVLEERVVTPLGGGQGVAVDFDLVCATHGDLPALVKAGRFRADLMYRVAGF
GVSLPSLNRRADRHALITRLFLESGGAAKHLRLESDALEALAAYRWPGNVRELRSTLRAI
VALSNPGDSVHAPTLPAHLHGTAPSQPQEDTAIDARPAQQHTAEPLVAITRHAIDEALKA
SDHDVARAARRLGVHRSTIYRHLARQRGKPTDSMNPSTFAHDQT
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagcgcagttgccatcggtcagagtggcgcaggcccgcgagctgttcttcggg
cagggccgcgaccccgcgccgtggatcacgccgcacatctcgcgctcgtggcagcgcagc
cgcccgatcgacgcccagtacatcgatcccgagccgatggcgctggcgctgctgagcgag
cggcgcgaacaggcgatgcgcttgctcaactgcgcgcaacccgaactcgacggactggcc
gagcatgcagtcggcaacggctgcgtcgtgatcctgtcggacgcgagcgggctgatcctc
gaagaaatcggcagccccgactttctgcccaaggccgaacgcatcgcgctgcagccgggc
gtggcatggtcggaaaaccaccgcggcaccaacgccatcggcaccgcgctggccgaacgc
gaagcactgatggtgctgggcggcgaacactacctggcacagaacggcgcactgggctgc
gcggcggcgcccatcttcaccgggcgcggcgaactggcgggcgcgctggacatctcgggc
gaaaccgcgcgcgtgaatcatcacgcgctgggcctcgtgcgcatggccgcgcaacaggtc
gaacaccggatgatgctggccgaggccagcggccacgtgctgcgcttccatgcgcggccg
gcgctgatcggcaccgcgcgcgaagggctcatggtgatcgagggcgggcggatcgtcgcg
gccaaccgtgtcgcgctcgaactgttcgaccgctcgtgggaaggcctgctcgacctcgac
gcccaggacttccttggcgcgaactggccgcgcatggaacaccggcgcagcctgctcacc
ttgccgggcgggcggcagatcgccaccgtgatggagcgctcgaccgcgccgggcggctca
cgcacggcaggcaggcgcacgcatgcgcccacgggcacggctgctgcacccgaggccgac
gatgttctgccgctgctggagcgcgccgtgcgggtgctgaacgaaggcgttccggtgctg
gtgaacggggaaaccggcagcggcaaggaagtgttctcgcgccgcctgcatgccgcaagc
cgccgcagcacgggccctttcgtggcagtcgactgcgcctcgctgcccgagacgctgatc
gagtccgagctgttcggctacgaagaaggcgccttcaccggcgccaagcgcaagggcatg
gcgggccgcatccgcgaagcccacggcggtgtgctgttcctcgacgaaatcgccgagata
ccgcttgcgctgcagacgcgtcttttgcgcgtgctcgaagaacgcgtggtcacgccgctc
ggcggcggccagggcgtggcggtcgatttcgacctggtctgcgccacgcacggcgacctg
cccgcgctggtgaaggccgggcgtttccgtgccgacctgatgtaccgcgtggcgggcttc
ggtgtcagcctgccctcgctgaatcgacgcgccgaccggcatgcgctgatcacgcggctg
ttcctcgaatcgggcggcgcggccaagcacctgcggctggaaagcgatgcgcttgaagcg
cttgcagcgtaccggtggccgggcaatgtgcgggagctgcgcagcacgctgcgcgccatc
gtcgcgctgtccaaccccggcgattcggtgcacgcccccacgctgccggcgcatctgcac
ggcacagccccatcgcagccgcaagaagacacggccatcgatgcccggcctgcgcagcag
cacacggccgagccgttggtggccatcacgcgccacgccatcgacgaggcgctcaaggcc
agcgaccatgatgtggccagggcggcgcggcgcctcggcgttcaccgcagcaccatctac
cgccacctcgcgcgccagcgaggcaagcccaccgattccatgaacccgagtacctttgcc
catgaccagacctga
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