Variovorax sp. PAMC26660: H7F35_26555
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Entry
H7F35_26555 CDS
T10234
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
vaz Variovorax sp. PAMC26660
Pathway
vaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H7F35_26555 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaz03400
]
H7F35_26555 (uvrB)
DNA repair and recombination proteins [BR:
vaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H7F35_26555 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H7F35_26555 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_22
AAA_16
AAA_25
UB2H
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
QNK71731
LinkDB
All DBs
Position
5640297..5642339
Genome browser
AA seq
680 aa
AA seq
DB search
MRYPDSPFELFQPYPPAGDQPKAIDGLVEGVLDGEVFQTLLGVTGSGKTFTMANVIARLG
RPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINE
HIEQMRLSATKSVLERRDTVIVATVSAIYGIGTPEDYMEMRLIARVGDKVGQRDLISRLI
RMQYTRNEQDFARGTFRVRGDTIDVFPAEHSELAIRFELFDDEIESLQLFDPLTGRVRQK
VPRFTVYPSSHYVTPRDKVLAAVETIKIELAERLKELVGAGKLVEAQRLEQRSRFDLEML
AEIGHCKGIENYTRHLSGAAPGEPPATLTDYLPKDALMFLDESHQMIGQLNAMYSGDRAR
KTTLVEYGFRLPSAMDNRPLKFEEFETRMRQCIFVSATPAQYEKDHSGNVVEQLVRPTGL
IDPEVEVRPATHQVDDVLGEIRIRVDKHERVLITTLTKRMAEQLTDYLGDNGVKVRYLHS
DVDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQT
IGRAARNLNGKAILYADRMTESMKKAIGETERRRTKQIAHNEANGITPRSIVKQVRDLID
GVYSEKTGKEMAKLDLERAKVEDMSEKDIAREIKRLEKLMLEHARNLEFEKAARVRDQLA
LLREQAFGGSGSDNIAVLPQ
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atccgctaccccgactcgcctttcgagcttttccagccgtatccgccggccggggaccag
cccaaggcgatcgacgggctggtcgagggcgtgctcgacggcgaggtgttccagacgctg
ctgggcgtgacgggctcgggcaagaccttcaccatggccaacgtgatcgcgcggctgggc
cgcccggccatcgtgttcgcgcccaacaagacgctggcggcgcagctctacagcgagttt
cgcgagttcttcccgaagaacgcggtcgagtacttcgtgagctactacgactactaccag
cccgaggcctatgtgccgcagcgcgacctgttcatcgagaaggactcctcgatcaacgag
cacatcgagcagatgcggctgtcggccaccaagagcgtgctggagcggcgcgacacggtg
atcgtggccacggtgagtgcgatctacggcatcggcacgcccgaggactacatggagatg
cggctgattgcccgcgtgggcgacaaggtcggccagcgcgacctgatctcgcggctcatc
cgcatgcagtacacgcgcaacgaacaggactttgcacggggcacgttccgcgtgcgcggc
gacaccatcgatgtgttcccggccgagcacagcgagctggcgatccgcttcgagctgttc
gatgacgagatcgagtcgctgcagctttttgacccgctcaccggccgtgtccggcagaag
gtgccgcgcttcacggtgtacccgtcgagccactacgtcacgccgcgcgacaaggtgttg
gcggccgtggagaccatcaagatcgagctggctgagcggctcaaggaactggtgggggcg
ggcaagctggtcgaggcacagcggctggagcagcgcagccgtttcgaccttgaaatgctc
gccgagatcggccattgcaaaggcatcgagaactacacgcgccacctgtcgggcgccgca
cccggcgagccgcccgccacgctgaccgactacttgccgaaggacgcgctgatgttcctc
gacgagagccatcagatgatcggccagctcaacgcgatgtacagcggcgaccgggcgcgc
aagaccacgctggtcgagtacggctttcggctgccgagcgcgatggacaaccggccgctc
aagttcgaggagttcgagacgcgcatgcgccagtgcatcttcgtttcggcaacgccggcg
cagtacgaaaaagaccactccggcaatgtcgtagagcaactggtgcggccgacgggcctg
atcgacccggaggtcgaggtgcggcccgccacgcatcaggtggacgatgtgctgggcgaa
atccgcatccgcgtcgacaaacacgagcgcgtgttgatcaccacgctgaccaagcggatg
gccgagcagctgaccgattacctgggcgacaacggggtcaaggtgcgttatctgcacagc
gacgtcgacacggtcgagcgggtggaaatcctgcgtgacctgcgtctgggcaccttcgac
gtgctggtgggcatcaacctgctgcgggagggcctggacattcccgaggtctcgctggtg
gcgatcctcgatgccgacaaggaaggctttctgcgcgccgagcgctcgctgatccagacc
atcggccgcgcggctcgcaatctgaatggcaaggccatcctctatgcggacaggatgacc
gaatcgatgaagaaggcgatcggggaaactgagcgccgccgcaccaagcagatcgcccac
aacgaggccaatggcatcacgccgcgcagcatcgtcaagcaggtgcgcgacctgatcgat
ggcgtctacagcgagaagaccggcaaggaaatggccaagctcgacctggaacgtgccaag
gtcgaggacatgagcgaaaaggacatcgcccgggaaatcaagcggctggaaaaactcatg
ctcgaacacgcccgcaacctcgagttcgagaaggcagcgcgggtgcgagaccaactggcg
ttgctgcgggagcaggcctttggcggctcgggcagcgacaacatcgcagttttgccgcag
tag
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