Verrucomicrobia bacterium IMCC26134: IMCC26134_00155
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Entry
IMCC26134_00155 CDS
T03830
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Pathway
vba03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IMCC26134_00155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vba03400
]
IMCC26134_00155
Enzymes [BR:
vba01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
IMCC26134_00155
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IMCC26134_00155
DNA repair and recombination proteins [BR:
vba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IMCC26134_00155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AKC81579
UniProt:
A0A0E3YT52
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All DBs
Position
complement(35704..36567)
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AA seq
287 aa
AA seq
DB search
MPELAEVEYIRRRWNPGLGHVVTTVRLHPGAGVFKTCDSAVLAKLLPGARLDSSAAAAKQ
MLFRFTADTPARTPLWLGLHLGMTGELTVRPAGLPAAKADHLILDQPAAPAAKNHPGHSL
VFSDFRMFGRVQFHAGADAPAWWTGIAPAVTSADFTLAVVSEFLTRRARAPLKAVLLMQE
RFPGIGNWMADEILWRAALHPARRCGDLTTAEIKKLHRETVWVAAQALRLIGEADTPEWP
DPPATWLFQHRWQDGGKCPRTQKPLERAAIGGRTTCWSPARQKLAAH
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactcgccgaagttgaatacatccgccgccgctggaacccgggcctcggccac
gtcgtcaccacggtccgcctccaccccggcgccggggttttcaaaacctgcgactccgcc
gtgctcgcgaaactcctccccggcgcgcggctcgactcttccgccgccgccgcgaagcag
atgctcttccgcttcaccgccgacacccccgcccgcaccccgctctggctcggcctccac
ctcggcatgaccggcgagctcaccgtgcgccccgccggcctgcccgccgccaaggccgac
cacctcatcctcgaccaacccgcagccccggccgcaaaaaaccaccccggtcactcgctg
gtgttctccgatttccgcatgttcggccgcgtccaattccacgccggcgccgacgccccc
gcctggtggaccgggatagcccccgccgtcacctccgccgactttaccctcgccgtcgta
tccgaattcctgacacgccgagcccgcgccccgctcaaagccgtgctcctgatgcaggaa
cgcttccccggcatcggcaactggatggccgacgagatcctttggcgcgccgccctccat
cccgcccgccgttgcggcgacctcaccaccgccgagattaaaaaacttcaccgcgagacc
gtctgggtcgccgcccaggccctgcgcctgatcggcgaagccgacacccccgaatggccc
gatccgcccgcaacctggcttttccagcaccgctggcaggacggcggcaaatgccctcgc
acccaaaaacccctcgaacgcgccgccatcggaggccgcaccacctgctggtcccccgcc
cgccaaaagctcgccgcccattga
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