Verrucomicrobia bacterium IMCC26134: IMCC26134_01410
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Entry
IMCC26134_01410 CDS
T03830
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vba03019
]
IMCC26134_01410
Enzymes [BR:
vba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IMCC26134_01410
Messenger RNA biogenesis [BR:
vba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IMCC26134_01410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
WHD_HA2
AAA_19
AAA_22
SRP54
nSTAND3
AAA_25
AAA_30
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AKC83834
LinkDB
All DBs
Position
373092..377174
Genome browser
AA seq
1360 aa
AA seq
DB search
MADAATPSPDFPFRINFPPELPISERAGEIVDLLGKHQVIILAGETGSGKTTQIPKMCLA
AGGGTRGQIACTQPRRVAALSVSRRVAEELGVQWGREVGCKIRFEDRTSRNTVVKFMTDG
MLLAEVQSDPLLRAYDTVILDEAHERSLNIDFLLGHLRNLRFKRPELRIVITSATIDTEV
FSKAFDDAPIVQVSGRTYPVEVIYAPLDSLGSDAAEGDEPASRPESLHYVDGAVEAVERI
LAGDKNSPSSGGDILVFMPAERDIRECCEILEGRHRSAEVIPLFGRLSQAEQQRIFAESR
RRKIIVATNIAETSLTLPGIRFVVDTGLARISRYVPAARTRRLPIEEVAQSSCDQRKGRA
GRVAEGVCIRLYSEADYNERPRFAQPEIQRANLADVILRMKAFGLGDIERFPFINMPAVK
SIRAGYGLLEELGALDPAFEAPDPDAASRPLTPLGRELARLPVDPTVGRMILQAREEKAL
HEVLVIAAGLSIQDPRDRPMDAREKADAAHRRFVHPDSDFLTLLAIWETFHDELERLSQA
RLRRFCRDHFLSYTRIREWRDIYAQLLDVLESRKDFQMSSVFDGIAPADRTPAKLASGSP
GYRAIHRSIVSGLLGNIAARDEENGDYRASHDRRISLFPGSALHVRTDQKKNQTAPSRGA
DARQKKDSKSPRWLMAAEIMETSRLYARTAARLDPAWALDLGRHLLKISHSEPFWNQDAG
RVMVKQRTRLHGLELENRAVSYGKIDPAHATEIFIREALVNDVITWPLDFLAHNRDVLDE
LEHLLTRARDTGFLNLSEALYRFYADRLQPGRASDAPDDGVSSVQDLVALVRERRGKYPR
FLMLAPEDLRDPASIPVDELAFPAALPLGQSALPLTYTYRPGQSDDGVTLDISPADAARL
TPIALDWAVPGHLALKVEHYLSALPKEARRLFVPLAETVKILAAAVAARDRLTGRRESLP
DALASCITERFPLRLDASAWSAKPLPEHLLVRIRVIDEKGRELFAARDLGELSRLLAEHL
RTASAKVAQDAPAAWTRAREKWEKPDQMTWTFGEKIPGPVEVCIQNGLTIYAHPALKIGS
GGVALRLARSAEEAAAQTRIGLGRLLELELRHELAFLHKEMRGLRELGALIATYAPLNQL
TEDASGLFQRWLCDPVRVAEPTQKAFTAAVAQAKHDLRSSGAKLCATLREIFSLRSSLEV
HPTPYPTLAGDLAQLLPKTLLREIDHARLGHLPRYLKGLKLRADRWRQSPAKEAERSRTL
SPWLARQRALPRSDVRYWLVEEYRVSLFAQELGTAEAVSPQRLEREFAAQPGMTATMTSA
TQSPAAAPKSAPTPISVVALPAHKGAPMKSLGALGDLFRK
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgccgccacaccttcccctgactttccttttaggataaatttcccgcccgag
ctgcccatcagcgagcgtgccggggagatcgtggacctgctcggcaaacatcaggtcatc
attctcgccggtgaaaccggttcaggcaaaaccacccaaattccaaagatgtgcctcgct
gccggtggcggcacccgcggccagatcgcctgcacccagccacgccgtgttgccgccttg
tccgtctctcgccgtgtcgccgaggagctcggcgtgcaatgggggcgcgaggtcggctgc
aaaatccgtttcgaggaccgcacttcccgcaataccgtcgtcaagtttatgaccgacggc
atgctgctcgccgaggtccagtccgaccctctgctgcgcgcctacgataccgtcatcctc
gacgaggcgcacgagcggtccctcaacatcgacttcctcctcggccacctgcgcaatctc
cgcttcaagcgccccgagctgcgcatcgtcatcacctccgccacgatcgatacggaggtt
ttttctaaagcgttcgacgacgctcccatcgttcaggtttccggccgcacctaccccgtc
gaggtcatctacgccccgctggactccctcggctccgacgccgccgagggcgacgaaccc
gcttcgcgtcccgaatcgcttcactacgttgatggcgcggtcgaggcggtggagcgcatt
cttgctggcgataaaaatagcccttcctccggcggcgacatcctcgtcttcatgcctgcc
gagcgcgatatccgcgagtgctgcgaaatcctcgagggccgccaccgctccgccgaggtg
attcctctcttcggccgcctctcccaagccgagcaacagcgcatcttcgccgagtcccgc
cgtcgcaaaatcatcgtcgcgaccaacatcgccgagacttcgctcacccttcccggcatc
cgctttgtcgtcgacaccggactcgctcgtatcagccgctacgtgcccgccgcccgcacc
cgccgcctgccgatcgaggaggtcgcccagtcgagctgcgaccagcgcaaaggccgcgcc
ggccgcgttgccgaaggcgtttgcatccgtttgtattccgaagcggactacaacgagcgc
ccgcgcttcgcccagcccgagatccagcgcgccaacctcgccgacgtcatcctgcgcatg
aaggccttcggcctcggcgacatcgagcgtttccccttcattaacatgccggcggtgaag
tccatccgcgccggctacggcctgcttgaggagctgggcgcgctcgatccggccttcgaa
gcccccgaccccgacgccgcatcccgcccgctcaccccgctcggccgcgagctcgcccgc
ctcccggttgatcccaccgtcggccgcatgattctccaggcacgggaggaaaaggcgctc
catgaggttcttgttatcgccgccggactttccatccaggacccacgcgaccggcccatg
gacgctcgtgaaaaagccgacgccgcccaccgtcgcttcgtccatcccgactccgatttc
ctcacgctcctcgctatctgggaaaccttccacgacgagctcgagcgcctctcgcaagcc
cgcttgcgccgtttctgccgcgatcatttcctgagctacacccgcatccgcgagtggcgc
gacatctatgcccagctgctcgatgtgctcgagtcgcgcaaagattttcagatgagctcg
gtcttcgacggcatcgcccccgctgaccgcacgccggccaaactcgcctccggttcgccc
ggctaccgcgccatccaccgcagcatcgtctccgggctcctcggcaacatcgccgcccgc
gacgaggaaaacggcgactacagggccagccacgaccgccgcatctcgctttttccaggc
tccgcgctccacgtccgcaccgaccagaaaaagaaccagaccgccccgtcgcgcggcgca
gacgcgcgccagaaaaaagactcgaagagtcctcgttggctcatggccgccgagatcatg
gagacctcgcgcctttacgcgcgcaccgccgcccgcctcgaccccgcctgggcgctcgat
ctcggccgccacctgctcaagatttcccacagcgagcctttttggaatcaagacgccggc
cgggttatggtgaagcaacgcacccggctgcacggcctcgaactcgaaaatcgcgccgtt
tcctacggcaaaatcgaccccgcccacgccaccgagatctttatccgcgaggcgctggtc
aacgacgtcatcacctggccgctcgattttctggcgcacaaccgcgatgtgctcgacgaa
ctcgaacacctgctcacccgcgcccgagacaccggtttcctcaacctctccgaggcgctt
taccggttctacgccgatcgcctgcagcccggccgcgcttccgacgccccggatgatggc
gtatcttccgtgcaagacctcgtcgccctggttcgcgagcgtcgcggcaaatacccgcgc
ttcctcatgctcgcgcccgaggacttgcgcgatcccgccagcatcccggtggacgagctc
gccttccctgccgcgcttccgctcggccagagcgccctcccgctcacctacacctaccgc
cccggccagtccgacgacggtgtcaccctcgatatttcccccgccgacgccgcgcgcctc
acgcccatcgccctggattgggccgtgcccggccacctcgcgctcaaggtcgaacactac
ctctccgcgctgcccaaggaagcccgccgccttttcgttcccctcgccgagacagttaag
atcctcgccgccgcggtcgccgcgcgcgaccgcctcaccggccgtcgtgaatccctgccc
gacgccctcgcctcctgtatcaccgaacgcttcccgctccggctcgacgcttccgcctgg
tccgccaaacccctgcccgagcaccttcttgtccgcattcgcgtgatcgatgagaaaggc
cgagaactcttcgccgcgcgcgacctcggcgaactctcccgcctcctcgccgagcatctc
cgcaccgccagcgccaaggtcgcccaggacgctcccgccgcctggacccgcgcccgcgag
aagtgggaaaagcccgaccagatgacctggacctttggcgaaaaaattccaggtccggtc
gaagtctgtatccaaaatggtctcaccatctacgcccaccccgctctaaaaataggcagc
ggcggcgtcgccctgcgcctcgcccgcagcgccgaggaggccgccgcgcaaacccgcatc
ggtctcggccgcctgctcgagctcgagctgcgccacgagctcgcgttcctgcacaaggaa
atgcgcggcctgcgcgaactcggcgcgctcatcgccacctacgccccgctcaaccagctc
accgaggacgcctccggccttttccaacgctggttgtgcgaccccgtgcgcgtggccgag
cccacccagaaagcattcaccgccgccgttgcgcaggcgaagcatgatcttcgcagcagc
ggggcgaagctttgcgcgaccttgcgggagattttcagtctgcgctcgtcgcttgaagtt
catcccacgccctatccgacgctggccggcgacctcgcccagctcctgcccaagactctc
ctgcgcgagattgatcacgcccggctcgggcacctgccgcgctacttgaaaggtctcaaa
ctccgcgctgaccgctggcgtcaaagcccggcgaaggaggcggagcgcagtcgcacctta
tcaccgtggctggcccgccagcgcgcgctcccgcgcagcgacgttcgctactggttggtt
gaggaataccgcgtcagcctctttgcccaggagctcggcaccgccgaggcggtgagtcct
caacgcctcgaacgcgagttcgccgcccaacccggcatgacggcgacgatgacctctgcg
acccaaagcccggcggccgcgcccaagtccgcccccaccccgatctccgtcgtcgcactc
cccgcgcacaaaggcgcgcccatgaaatccctcggcgcgctcggtgatctttttagaaaa
tag
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