Verrucomicrobia bacterium IMCC26134: IMCC26134_01570
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Entry
IMCC26134_01570 CDS
T03830
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Pathway
vba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC26134_01570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vba03019
]
IMCC26134_01570
03400 DNA repair and recombination proteins [BR:
vba03400
]
IMCC26134_01570
Enzymes [BR:
vba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMCC26134_01570
Messenger RNA biogenesis [BR:
vba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC26134_01570
DNA repair and recombination proteins [BR:
vba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IMCC26134_01570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AKC81785
LinkDB
All DBs
Position
complement(422218..424062)
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AA seq
614 aa
AA seq
DB search
MPTLEELLHTLSTTFGYDEFRPLQREIIETSLAGRDVFALLPTGGGKSMCFQLPALHRTG
LTVVVSPLIALMKDQVDQMQAAGVAATFLNSSLDSATARSRLAGLHRGEFRLLYVAPERL
MLDNWKENLRAWNVQCLAIDEAHCVSEWGHDFRPEFRQIAQLRDLLPEIPIIALTATATE
RVREDIVKHLRLRTPAVFVASFNRPNLTYKVLPKDEPLKQIIDWVKRREDESGIVYCASR
ASAERVAESLAGRGYSAKPYHAGLDAAERARNQELFLRDETKIICATIAFGMGINKPNVR
WVIHYDLPKNIEGYYQETGRAGRDGLPGDCLLLFSGGDIAKQTHFLDEMTDAAEQARARQ
QLKLMARYGESTGCRRRELLAYFGETFPLDNCAACDNCNEPRDTYDGTVHAQKFLSCVFR
CRQASRFGVGLNHVVEVLVGAKTEKILKWGHDRLTTYGIGGDLPRHHWASVGRELQRLGY
IVQGDGEYPTLEISAEGLAILKSRQHVTLTKPSEFTPKAKRSPIRREGDVACDEFLLAEL
KKLRKRLADEREVPAYVIFGDKTLRQMARDYPVREKDMHGIFGMGEKKREEFGSTFAKFI
SDFLENNPRQQFND
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtgccgactctcgaagaacttctccacaccctcagcaccacgtttggctacgacgagttc
cgcccgctccagcgtgagatcatcgagacttccctggccggccgcgatgtcttcgccctg
ctccccaccggcggcggcaagtccatgtgcttccagctccccgccctccatcgcaccggc
ctcaccgtcgtcgtctcgccgctcatcgcgttgatgaaggaccaggtggaccagatgcag
gccgccggcgtcgccgccacgttcctcaactcctccctcgactccgccaccgcccgctcg
cgcctcgccggactgcatcgcggcgagttccgcctcctctacgtcgctcccgagcgcctg
atgctcgacaactggaaggagaacctccgggcctggaacgtccagtgcctcgccatcgac
gaggcccactgcgtctccgaatggggccacgatttccggcccgagtttcgccagatcgcc
cagctccgcgacctcctgccggagattcccatcatcgccctcaccgccaccgccaccgag
cgcgtgcgcgaggacatcgtcaaacacctgcgcctgcgcacccccgccgtcttcgtcgcc
tctttcaaccgccccaacctcacctacaaggtcctcccgaaggacgaaccgctcaaacag
atcatcgactgggtgaagcgccgcgaggacgagtccggcatcgtttactgcgcatcacgc
gccagcgccgagcgcgtggccgaatccctcgccggccggggctactccgccaagccctac
cacgccggcctcgacgccgccgaacgcgcccgcaatcaggagctgtttctccgcgacgag
accaagatcatctgcgccaccatcgccttcggcatgggcatcaacaagcccaacgtccgc
tgggtcatccactacgacctgcccaaaaacatcgagggctactaccaggaaacgggccgc
gccggtcgcgacggcctgcccggcgattgcctgctccttttcagcggcggcgacatcgcc
aagcagacccacttcctcgacgagatgaccgacgccgccgagcaggcccgcgcccgccag
cagctcaaactcatggcccgctacggagaaagcaccggctgccgccgccgcgaactgctc
gcctacttcggcgagaccttcccgctcgataactgcgccgcctgcgacaactgcaatgaa
ccgcgcgacacctacgatggcacggtccacgcgcaaaagtttctctcctgcgttttccgc
tgccgtcaggcctcccgcttcggcgtgggactcaaccacgtcgtcgaggtcctcgtcggc
gcgaagaccgaaaaaatcctcaagtggggccacgaccgcctcaccacctacggcatcggc
ggcgacctgccgcgtcaccattgggcctccgtcggccgcgagctccagcgcctgggctac
atcgtccagggcgacggcgaataccccacgctcgaaatcagcgccgagggcctcgccatc
ctcaaatcccgccagcacgtcaccctcaccaagccttccgagttcaccccgaaagccaaa
cgctccccgatccgccgcgaaggcgacgtcgcctgcgacgagtttctgctcgccgaactc
aagaagctccgcaagcgcctcgccgacgagcgcgaggtgccggcgtatgtgatttttggc
gacaaaaccctccgccagatggcccgcgactatccagtccgtgagaaggacatgcacggc
attttcggcatgggcgaaaagaagcgcgaggagttcggctccaccttcgccaagttcatc
tccgacttcctcgaaaacaacccccgccagcagttcaacgactag
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