Verrucomicrobia bacterium IMCC26134: IMCC26134_01640
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Entry
IMCC26134_01640 CDS
T03830
Name
(GenBank) DNA-binding protein
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Pathway
vba03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IMCC26134_01640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vba03400
]
IMCC26134_01640
Enzymes [BR:
vba01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IMCC26134_01640
DNA repair and recombination proteins [BR:
vba03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IMCC26134_01640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
Motif
Other DBs
NCBI-ProteinID:
AKC81796
UniProt:
A0A0E3UHB8
LinkDB
All DBs
Position
complement(442993..443883)
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AA seq
296 aa
AA seq
DB search
MSTWHPWQAVPLLPHASPFTPASLAELLDGGQAFRWHARPQNTFEGQWAGHHVLVRLVSR
DGTLEFAAPDHADPATTSAALHTYLSGPTAGPDLLPWRSDAHLATAMDAFPGLRILRQPF
GETLLGFVCSATKQIPQIKQMQSLLATRHGRPLPDGSHALPTWPELATITEEELRACSLG
FRARHIAVIARFLAANPGWLEATEHAPYPEAKERLLTLQGVGEKVADCVLLFGAGRLEAF
PVDTWILKALARRYHLDGWKPAQVAHFGRTHFGPQAGLAQQYLFAYERAAARGKVT
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttggcatccttggcaagccgtcccgctcctccctcacgcttctcccttcacc
cccgcgtcactcgccgagctgctcgacggtgggcaggcctttcgctggcacgcccgcccg
caaaacaccttcgaaggccaatgggccggccaccacgtcctcgttcgcctcgtctcccgt
gacggcactcttgagttcgccgcgccagaccacgccgatcccgcaaccacgtcggccgcg
cttcacacctacctgagcggcccaaccgccggacccgacctgctgccctggcgcagcgat
gcccacctggccaccgccatggacgcctttcccggcctgcgcatcctccgccagcctttt
ggcgaaaccctcctcggcttcgtttgcagtgccaccaagcagatcccccagatcaaacag
atgcagtccctgctcgccacccgccacggccgccccttgcccgacggatcccacgccctg
cccacttggcctgaactcgccaccattaccgaggaggagcttcgcgcctgctcgctcggc
tttcgcgcccgccacatcgccgtcatcgcccgtttcctcgccgcgaaccccggttggctc
gaagccactgaacacgccccctaccccgaagccaaagagcgcctgctcacactccaaggc
gtcggtgaaaaggtcgccgactgcgttctccttttcggagccggccgcctcgaagccttc
cccgtcgacacgtggattctcaaggccctcgcccgccgctaccacctcgacggctggaaa
cccgcccaggtcgcccacttcggccgcacgcacttcggcccccaggccggcctcgcccaa
caatacctcttcgcctacgaacgcgccgccgcccgaggcaaagtaacctaa
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