Verrucomicrobia bacterium IMCC26134: IMCC26134_03855
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Entry
IMCC26134_03855 CDS
T03830
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Pathway
vba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC26134_03855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vba03019
]
IMCC26134_03855
03009 Ribosome biogenesis [BR:
vba03009
]
IMCC26134_03855
Enzymes [BR:
vba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC26134_03855
Messenger RNA biogenesis [BR:
vba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC26134_03855
Ribosome biogenesis [BR:
vba03009
]
Prokaryotic type
rRNA helicases
IMCC26134_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
WIYLD
UTP25_NTPase-like
CMS1
Motif
Other DBs
NCBI-ProteinID:
AKC82129
LinkDB
All DBs
Position
1057564..1059546
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AA seq
660 aa
AA seq
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MEKRPFKDLGLSPDVLKAIDKMGFEEASPIQTAVIPLLLEGRDVVGQSATGSGKTVAFGV
PAVEAIDPAIRKPQALILCPTRELAVQVAEEIGKLAYFKKGVREVPIYGGQSYERQFRAL
EAGAQIVIGTPGRVMDHMERGTLPLDALKLVALDEADRMLDMGFRDDIERILAATPAGRQ
LLFFSATMPPPIKQLIQRYAKDPAWVKIEALAQNAPQVEQVYFEVDRRSKIEALTRLIDI
NDFRFGIVFCATKLMVDDLAEHLGSRGYSVDRLHGDITQANRNKVMDKFRRRGFEFLIAT
DVAARGLDVDDLEVVFNYDLPNDSEDYTHRVGRTGRAGRKGKAFTFVSGREVYGLQNMIR
FAKLKIRRENIPSLDQVEEARENVFFERLRATLDAGMFRKQDRMIDRLLEQGYPSTDIAS
ALIHLMNGGAAGDPSASGESAAAARPYDDESGPAPALPAPPAISVAPVPALAPAPKPAAK
AALKSALPPGYVAPSARPASDEAPAVSTFKPAIKPAAKAEGWKAAPFAKTKVAAPKSDPR
PGEVGADTPREGDDEAVRPSKQKYERAARTGREPGFTTIYLNVGRKNLVTPADIVGKVAG
VTRLPSSVVGAMDIHQRHTLVDVSSANAELIVTKMSGIRLKNIALAPALATDAHRAEPRD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgtccctttaaagatttgggcctctcgcccgatgttctcaaggccatcgac
aagatgggctttgaggaagcctcgccgattcaaactgcggtcatcccgttgctgctcgag
ggccgcgacgtcgtcggccagtcagccaccggatcgggtaaaaccgtcgcattcggcgtt
cccgccgtcgaagcaatcgaccccgccatccgaaagccccaggcccttattctctgcccg
acccgcgagctcgccgtgcaagtcgccgaggaaattggtaaactcgcctactttaaaaaa
ggggtgcgcgaagtgcccatctacggcggccagagctacgagcgccagttccgcgccctc
gaagccggagcgcagatcgtgatcggcacgcccggtcgcgtgatggatcacatggagcgc
ggcaccctgccgctcgacgccctcaagctcgtcgccctcgacgaagccgatcgcatgttg
gacatgggtttccgtgacgacatcgagcgcatcctcgcagccaccccggccggccgccag
ttgctgtttttctcggccacgatgccgccgccgatcaagcagctcatccagcgctacgcc
aaggacccggcctgggtgaagatcgaggccctcgcgcaaaacgcgccgcaggttgagcag
gtttacttcgaggtggaccgccgctcgaagatcgaggcactcacccgcctgatcgatatc
aacgattttcgcttcggtatcgtgttctgcgcgaccaagctgatggtggacgacctcgcc
gagcaccttggctcgcgcggctactcggtggaccgcctgcacggcgacatcacccaggcg
aaccgcaacaaggtcatggacaagttccgccgccgtggcttcgagttcctgatcgccacc
gacgtcgccgcccgcggcctcgatgtggacgatctcgaggtggttttcaactacgacctg
cccaacgattccgaggactacacccaccgcgtcggccgcaccggtcgtgcggggcgcaag
ggcaaagcctttaccttcgtctcgggccgcgaggtttacggtctgcagaacatgatccgt
ttcgcgaagctgaagatccgccgcgaaaacattccctctctcgatcaagtcgaagaagcc
cgcgaaaacgtgtttttcgagcgcctgcgcgccacccttgatgccgggatgttccgcaag
caggaccgcatgatcgaccgcttgctcgagcagggatacccgagcaccgatatcgcctcc
gcgctgatccatctcatgaacggtggcgcggccggcgatccgtctgcgagcggcgagagt
gcggcggcggcccgtccttacgatgacgagagcggtccggcacccgcgctgcctgcgccg
cccgcgatcagtgtcgctccggttccggcccttgcccccgcccccaagcccgcagccaag
gctgctttgaagtccgcgctgccacccggctacgtcgcgccatcagccaggccggcatcg
gacgaagcgccggcggtgtccacgttcaagcccgcgatcaagcccgccgccaaggctgag
ggctggaaggccgctccattcgccaaaaccaaggttgctgcgcccaagtccgatcctcgt
cccggcgaagtcggcgccgacactccgcgcgagggcgatgacgaagcggttcgtccgtcc
aaacaaaaatacgagcgcgccgcccgcaccggacgcgagcccggcttcaccacgatttat
ctgaacgttggccgcaagaacctcgtcaccccggctgacatcgtcggcaaggtggcgggt
gtcacccggttgccgtcctcggtggtgggtgcaatggacatccatcagcgccacacgttg
gtggatgtgagcagcgccaacgccgaactaatcgtgaccaagatgagtggcattcgactc
aaaaatatcgcgcttgcacctgccttggccaccgacgcgcaccgcgccgaacctcgggat
tga
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