Verrucomicrobia bacterium IMCC26134: IMCC26134_08400
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Entry
IMCC26134_08400 CDS
T03830
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Pathway
vba03420
Nucleotide excision repair
vba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMCC26134_08400
03430 Mismatch repair
IMCC26134_08400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vba03400
]
IMCC26134_08400
Enzymes [BR:
vba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMCC26134_08400
DNA repair and recombination proteins [BR:
vba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC26134_08400
MMR (mismatch excision repair)
Other MMR factors
IMCC26134_08400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
DUF4292
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AKC84017
UniProt:
A0A0E3YYT0
LinkDB
All DBs
Position
2205669..2207681
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AA seq
670 aa
AA seq
DB search
MDYPLDHTPDTGPGFPPIDFRAELNDEQFAAVTAEPGPLLVLAGAGSGKTRTLTYRVAYL
LSMGVRPGDILLLTFTNKAAKEMLARVEHLTGVEPRRFWGGTFHSIGARILRMYGDALGL
PKNSTILDADESESLLKSAVEASDKIFFKDKTHPKPGPLFSVISLARNTRQSIAETISRN
FPQYNELAGRIPAFAAAYAASKREQNVLDYDDLLELWLELLIKAPDIATYFSTRFRHVLV
DEYQDTNTLQSEIVDRMGAHHCIMAVGDDAQCIYSWRGANFENIMTFPDRHADTALHRIE
TNYRSTPQILALANGVLEAQPKGRHFEKELRAARGNSKKPYLVQAMDDREQAEFIIKRVR
SLIEDDGVSPSEIAVLYRSHFIALETQLSLSRAGVPYTITSGVKFFERQHVRDLIALINF
VYNPANTLAWERLVSLLPKVGEKGAAKIHAAALDHAKLLRLDFVDALASDDVAAKVPKDA
KEDWPQFCASLREVAQAMREAKPARAIELAIDGWYGDHMKGAYADYTDRLDELKALVGFA
SRYDEMQELLSQIVLLNGETSDRSVAPDLESIKLTTVHQAKGLEYDVVFVIGLADGMFPG
RRSIEDNDVEEERRLFYVAVTRAKNELYLCYPKIASRAGPGGMMLNPSRFLTELPSHLYD
TLRIKRQFGW
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggattatcccctcgatcatacgcccgataccggccccggatttccgcccatcgatttt
cgtgccgagcttaacgacgagcaattcgccgccgtcaccgccgagcccggtcctttgctc
gtgctcgccggcgcgggctcgggcaagacccgaaccctgacttatcgcgtcgcctacctg
ctctccatgggcgtgcgccccggcgacattctgctgctcaccttcaccaacaaggccgcc
aaggaaatgctagcccgggtcgagcacctcaccggagtcgaaccccgccgcttctggggt
ggcacattccactccatcggggcccgtatcctccgcatgtatggcgacgccctcggtctg
ccgaaaaactccaccatcctcgacgccgacgaatccgagtctctgctcaagtccgccgtg
gaggcgtcagacaagattttcttcaaggacaagacccaccccaagcccggcccgctgttt
tccgtcatctccctcgcccgcaatacccgccagagcatcgccgagaccatttcgcgcaac
ttcccccaatacaacgagctcgccgggcgcatccccgctttcgccgccgcctacgccgcg
agcaagcgcgagcagaacgtgctcgattacgacgatctgctcgagctctggctggagctt
ctcatcaaggcccccgacatcgccacctacttctccacccggttccgccatgtgctggtg
gatgagtatcaggatacgaatacgctccagtccgaaatcgtggaccgcatgggcgcccac
cactgcattatggccgtcggcgatgacgcccagtgcatctactcatggcgcggggcgaat
ttcgaaaacatcatgacttttcccgaccggcacgcggacaccgccttgcaccggatcgag
accaactaccgctccaccccgcagatcctcgccctcgccaacggcgtgctcgaggcccag
cccaagggccgccacttcgagaaggagctccgggccgcccggggcaactccaagaagccc
tacctcgtccaggcgatggatgaccgcgaacaggccgagttcatcatcaaacgcgtgcgc
tccctgatagaagacgacggcgtgtctccatccgaaatcgccgtgctctaccgttcgcac
ttcatcgcgctcgaaacccagctttccctctcccgggccggtgtgccctacaccatcacc
agcggcgtgaagttttttgaacgccagcacgtgcgcgatctcatcgcgttgataaacttc
gtctacaatccggccaacaccctcgcgtgggaacgcctcgtttcactgctccccaaggtc
ggagaaaagggcgcggctaaaatccacgccgccgcgctcgaccacgccaagcttctccgc
ctcgacttcgtggacgccctcgccagcgacgacgtagcggccaaggtgcccaaggatgcg
aaggaagactggccccagttttgcgcctccctgcgcgaagtcgcccaggccatgcgcgag
gccaaacccgcccgcgccatcgaactcgcgatcgatggctggtatggcgaccacatgaag
ggcgcctacgcagactacaccgaccggctcgatgagttgaaggccttggtcggcttcgcc
tcccgctacgacgagatgcaggaacttctgtcccagatcgttctgctcaacggcgagacc
agcgaccgctccgtcgcgccggatttggaaagcatcaaactcaccaccgtgcatcaggcc
aaggggctggaatacgatgtggtgtttgtcatcggccttgccgacggcatgtttcccgga
cgccgctccatcgaggacaacgacgtggaggaggagcgccgactcttttacgtggcggtt
acccgcgcgaaaaacgagctctacctctgctaccccaagatcgcctcgcgcgcaggtccc
ggcggcatgatgctaaaccccagccgcttcctcaccgagctaccctcgcacctttacgac
accctgcgcatcaaacgacagttcggctggtga
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