Verrucomicrobia bacterium IMCC26134: IMCC26134_13005
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Entry
IMCC26134_13005 CDS
T03830
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Pathway
vba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMCC26134_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vba03021
]
IMCC26134_13005
03400 DNA repair and recombination proteins [BR:
vba03400
]
IMCC26134_13005
Enzymes [BR:
vba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMCC26134_13005
Transcription machinery [BR:
vba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMCC26134_13005
DNA repair and recombination proteins [BR:
vba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMCC26134_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF29
Motif
Other DBs
NCBI-ProteinID:
AKC83456
UniProt:
A0A0E3UJ89
LinkDB
All DBs
Position
complement(3417114..3418115)
Genome browser
AA seq
333 aa
AA seq
DB search
MPKRLGKFELPSKLTKVEDSATPTYAKFIAEPFEAGYGHTVGNSLRRVLLSSIEGSAISS
IKIDGVQHEFQSIDGVVEDVSDIVLNLKKVLIVSQKRETITLQIKVNKEGAVTAGDIQAD
ANIQIVNPDQVICTLDKARAFHAEVEIKTGRGYYPGEQNKKDEQSIGVIPIDSLFSPVRL
VKYSVEATRVGQITDYDKLILEIWTDGRIDPDAALKQSASILKHHLDVFDRVTDESYEFD
SQQSEVSEEQNKLRKLLNMSVNEIELSVRAANCLNNANITTVGELAMKTEQEMLKYRNFG
KKSLNEIKDKLEQLGLSLGMKFDERLLDAKKEA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacgcctcggaaagttcgaattgcccagcaagctcaccaaggtcgaggatagc
gccactccgacctacgccaagttcatcgccgagcctttcgaggccggttatggacatacc
gttggcaactccctgcgtcgtgtcctcctcagctccatcgagggctctgccatctcgtcc
atcaagattgatggcgtgcagcacgagttccaaagcatcgatggcgttgtcgaagacgtc
tctgatatcgtcctcaaccttaaaaaggttctcatcgtttcccaaaaacgcgagaccatc
accttgcagatcaaggttaacaaagagggtgcggtcaccgccggcgatattcaagccgac
gccaacatccagatcgttaatcccgatcaggtcatttgcaccctcgacaaggcccgtgcc
ttccacgccgaagttgagatcaagaccggtcgaggctactaccccggcgaacaaaacaag
aaggatgagcagtccatcggagtcattccgatcgactccttgttttctcctgttcgcttg
gtgaagtattctgtcgaggccacccgtgtcggccagattaccgattacgacaaacttatt
ctcgagatctggaccgatggtcgcatcgaccccgatgccgcgctcaagcagtctgcgtcg
attctgaagcatcaccttgatgttttcgatcgcgtcaccgacgagtcttacgaattcgac
agccagcagtctgaggtcagcgaggagcagaacaagctccgcaagctcctcaacatgtcg
gtcaacgaaatcgagctgtctgttcgcgccgccaattgcttgaacaacgccaacattacc
accgtgggcgaactcgccatgaagaccgagcaggagatgctgaaatatcgcaacttcggc
aaaaagtcgctcaacgagatcaaggacaagctcgagcagctgggcctttccctcggtatg
aaattcgacgagcgtctcctcgacgccaagaaggaagcctaa
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