Victivallales bacterium CCUG 44730: C5Q97_02185
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Entry
C5Q97_02185 CDS
T05502
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vbc
Victivallales bacterium CCUG 44730
Pathway
vbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5Q97_02185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbc03019
]
C5Q97_02185
03009 Ribosome biogenesis [BR:
vbc03009
]
C5Q97_02185
Enzymes [BR:
vbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5Q97_02185
Messenger RNA biogenesis [BR:
vbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5Q97_02185
Ribosome biogenesis [BR:
vbc03009
]
Prokaryotic type
rRNA helicases
C5Q97_02185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
WSD
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AVM43570
UniProt:
A0A2S0KR93
LinkDB
All DBs
Position
complement(567383..569260)
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AA seq
625 aa
AA seq
DB search
MSDLDNFRILGVSEQTLEALRAKGFEAPSPIQELTIPKLISGECDLVGQAQTGTGKTAAF
GIPIIELGEPGLRKPQALVLAPTRELSIQIAEELNSLKGKSELRIAPFYGGQAIEIQLQR
LRDGVDVVIGTPGRVLDLMRRGKLDFSALRFAVLDEADEMLDMGFIEEIEAILSETTPDK
RMLMFSATMPPEILKIAGQFMRDYEVIRTENRQLSTDLTEQIYFEVRREDKFEALSRILD
IEEDIYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQAMRTKVINQFKTKKFKILIA
TDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKTGTAITFVTPAEYRRLTMIQ
REAKTHIEKKELPQGRDVVEQKKQRFSELVSGALEGGMHSEYVNFAEELMTLGGSPAEVL
AAVLQLRFKGELLPENYRDFNPQQRRERRSWESLPDDHGATRLYIGVGKLDGYGAVKMLD
LLWEKARLKKYRVGKIDCFDHFSFVNVDFEAAEQVIDAFRRGGPKVQLASERPEDDSKSA
ERPSRGADGERPERPARPPRDREAGKPERREKAPAGRTMRKEKAPAEGPRMPKTPAAEKK
RRLKNWVEKISADIELKEKKSKKKK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatcttgacaatttccgtatcctcggcgtctccgagcagaccctcgaagcgctg
cgtgcgaaggggttcgaagccccgtcgccgatccaggagctgaccattccgaaactgatt
tcgggcgaatgcgaccttgtcgggcaggcgcagacaggaaccggcaaaaccgccgcgttc
ggcattccgatcatcgagctcggcgaacccgggctccggaagccgcaggcgcttgtcctg
gctccgacccgcgaactttcgatccagatcgccgaggaactgaattccctgaaggggaag
agcgaactgcgcatcgcgccgttttacggcgggcaggcgatcgaaatccagctgcagcgg
ctgcgcgacggtgtcgacgtcgtgatcggcacgccgggccgggttctcgatctcatgcgg
cgcggcaagcttgacttctccgcgctccgcttcgcggtgctcgacgaggcggacgaaatg
ctcgacatggggttcatcgaggagatcgaggcgattttgtccgagacgacgcccgacaag
cgcatgctgatgttctccgccaccatgccgcccgaaatcctgaagatcgccggacagttc
atgcgcgattacgaggtgatccgcaccgagaaccggcagctcagcaccgacctgaccgag
cagatctattttgaggtccggcgcgaggacaagttcgaggcgctgtcgcggattctcgat
atcgaggaggatatttacgcgctcgtcttctgccgcacccgcaacgatgtcgacgaactc
gtcgagaaactcaagctgcgcggccaccgtgtcgaggcgctgcacggcgatatcgcgcag
gcgatgcggacgaaggtcatcaatcagttcaagacgaagaagttcaagattctgatcgca
accgacgtcgcggcgcgcggcatcgacgtgaacgacctgacgcacgtcatcaattactcg
atgccgcaggggaccgaaacctacgtccaccgcatcggccgcaccggccgcgccggcaag
accggcacggcgatcacgttcgtgactcccgccgaataccgccggctgaccatgatccag
cgcgaggcgaagacgcacatcgagaagaaggagctcccgcagggaagggatgtggtcgaa
cagaagaagcagcgcttctccgagctcgtctccggggcgctcgagggcggcatgcacagc
gaatatgtgaatttcgccgaagagcttatgacgctcggcggctctccggcggaggtgctc
gccgccgttctccagctccgcttcaaaggcgaactcctgccggagaactaccgcgatttc
aatccgcagcagcggcgcgaacgccgttcgtgggagagtctgccggacgaccacggggcg
acccggctctacatcggcgtcggcaaactcgacggttacggcgcggtgaagatgctcgac
cttctctgggagaaggcgcggctcaagaaataccgggtcggcaagatcgactgtttcgac
catttcagctttgtgaacgtcgatttcgaggcggcggaacaggtgatcgacgcgttccgg
cgcggcggcccgaaggtgcagctcgcctccgagcgtcccgaggacgattcgaagagcgcc
gagcgcccgtcgcgcggagcggacggggaaaggccggagcgtccggcccgtccgccccgc
gaccgggaggccggaaagccggagcgccgcgaaaaggcgccggccggccggaccatgcgg
aaggagaaagccccggccgaaggcccccgcatgccgaagactcccgcggcggaaaagaag
cgccggctgaagaactgggtcgaaaagatttccgccgacatcgagctcaaagagaagaag
tcgaagaagaaaaaataa
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