Nibricoccus aquaticus HZ-65: CMV30_01925
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Entry
CMV30_01925 CDS
T05426
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vbh
Nibricoccus aquaticus HZ-65
Pathway
vbh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CMV30_01925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbh03400
]
CMV30_01925
Enzymes [BR:
vbh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CMV30_01925
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CMV30_01925
DNA repair and recombination proteins [BR:
vbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CMV30_01925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ATC62819
UniProt:
A0A290Q2E6
LinkDB
All DBs
Position
455361..456170
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AA seq
269 aa
AA seq
DB search
MPELAEVEFYRRRWDVALRHRIERVFLHPRAGVFKTCSPALIESTLPGETLLSSEAAAKQ
MLFRFTGDAWLGVHLGMTGELTAQPAAFVPRKHDHLVLALRETTLVFSDPRMFGRIQFHL
GPDAPAWWTTIAPAISSRAFSITAVSEFLRRRARTPIKAVLLMQERFPGVGNWMADEILW
RAEIHPRRTAGSLSESEITALHHETRHVAKRALEIIGTTTAPNIPDPPKSWLFPHRWTDG
GRCPKTGVLLKREDIGGRTTCWSPARQKL
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactcgccgaagtcgaattctaccgccgccgctgggacgtcgcgctccgccac
cgcatcgaacgcgtcttcctccacccccgcgccggcgtcttcaaaacctgctcccccgcg
ctcatagagtccacgctccccggcgaaacactcctcagctccgaagccgccgcgaaacaa
atgctcttccgcttcaccggcgacgcctggctcggcgtccacctcggcatgaccggcgaa
ctcaccgcccaacccgccgctttcgtcccgcgcaaacacgaccacctcgtcctcgcccta
cgcgaaaccaccctcgtcttcagcgacccccgcatgttcggccgcatccagttccacctc
ggccccgacgcccccgcttggtggaccacgatcgctcccgccatttcctcccgagccttc
tctatcaccgccgtctccgaattcctgcgacgccgcgcccgcaccccgatcaaagccgtc
ctcctcatgcaggaacgcttccccggcgtcgggaactggatggccgacgaaatcctctgg
cgcgccgaaatccacccacgccgcaccgccggctctctctccgaatctgagatcaccgcc
ctccaccacgaaacccgccacgtcgccaaacgcgccctcgaaatcatcggtaccaccacc
gcccccaatatccccgacccaccgaaatcctggctcttcccccaccgctggaccgatggc
ggccgctgccccaaaaccggcgtcctcctaaaacgtgaagacatcggcggccgcaccacc
tgctggtcccccgcccgccaaaaactctga
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