Nibricoccus aquaticus HZ-65: CMV30_05185
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Entry
CMV30_05185 CDS
T05426
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vbh
Nibricoccus aquaticus HZ-65
Pathway
vbh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vbh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CMV30_05185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbh03021
]
CMV30_05185 (rpoC)
03400 DNA repair and recombination proteins [BR:
vbh03400
]
CMV30_05185 (rpoC)
Enzymes [BR:
vbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CMV30_05185 (rpoC)
Transcription machinery [BR:
vbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CMV30_05185 (rpoC)
DNA repair and recombination proteins [BR:
vbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CMV30_05185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Med19
Motif
Other DBs
NCBI-ProteinID:
ATC63394
UniProt:
A0A290Q4I0
LinkDB
All DBs
Position
complement(1239655..1243800)
Genome browser
AA seq
1381 aa
AA seq
DB search
MSIQPSETAASPARDEVRSALGLDENPFDCVSITVSSPETIRNWSKGEVKNPETINYRTF
KPEPGGLFCQKIFGPVRDYECACGKYKRIKYKDVVCDRCGVEVTIARVRRERMGHIELAV
PVAHIWFLKSMPSRLGLLLDMTARSLERVIYYENFMVVDPGKTPLEMKQLLTDTEYRQAL
DEYGDDSFVAKMGAEAVREALGKMDMEATVAELQEQMRATKSKQIKKKLSKRLKVIQGFI
HSKSRPEWMVIEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKNLMQLKTP
DVIIHNEKRMLQEAVDALFDNGRHGRPVTGAGNRPLKSLSDMLKGKQGRFRQNLLGKRVD
YSGRSVIVIGPELKLNQCGLPKKMALVLFEPFIIRRLKELGFVHTVRGARKMIEKKSPEV
WDILEEVTKGHPVLLNRAPTLHRLSIQAFEPVLIEGEAIRVHPLVCTAYNADFDGDQMAV
HVPLSLEAVMECKLLMMATSNIFSPSSGKPILTPSQDIVLGAYYLTVEPRKKVAKGERIP
LLSGLQEVLFAKTDGALKVHDWVEIPNPDHGRDTVYGNKERKTLRTTVGRVIFNQIWPAG
LGYVNFPVPKAKLGDLILNTYKVAGDVITIETLDKLKELGFQTAMQAGISIGIDDMIIPE
DKKDIVADSRKKITEVEAQFNKGIITDGERYNKVVDIWTGATDKIAKAVFAKLEGNDGRP
EINPVYIMMDSGARGNKQQVRQLCGTRGLMAKPSGEIIERPILSSFREGLTVLEYFISTH
GARKGLADTALKTADAGYLTRKLCDVAMDVVIAEEDCGTRDGVWKKAIFEGDDEIVGLRE
RIIGRCVSDDVFNPLNPTELLVGSGELITEEIATKIEESGLERVKIMSPLTSTSRHGIDA
KSYGINPATNRVAKTGDSIGIIAAQSIGEPGTQLTMRTFHIGGVATGGFKTPEIRVRSGG
KVKYKGLRLVQTADGAAIVLNKTGSIQIIDSEDRELESYNIVVGSFLTIGDGEKIEKGAV
LAQWDPYNVPVLSEKGGTLVFKDMIPGVTVKRELDESSGRIATVVIEHKEDLNPQVEIRD
ASNKPLAAYSIPVGAQISVNEGDIIAPGALLAKTPRQASKTKDITGGLPRIAELFEARRP
KDAAEMARIDGVVSFEGTIRGKRKLVVKNEETSQEEEHLIPAGKHIIVQPGDVVHKGQHL
TEGSADPHEILEILGPSALYDFLISQVQEVYRLQGVTINDKHIEIIIRQMLRKVRITDPG
DSEYFWGEQIDRAAFIANNRRIEEAGGKPAEAEPILLGITKASLETESFISAASFQETTR
VLTDASTLGKIDMLKGFKENVIMGHLIPAGTGLPMYKKLKVTLPFGDEIPEAAPVAEVSA
S
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccaaccctcagaaaccgccgcgtcacccgcacgcgatgaagtccgctcggct
ctcggcctcgacgagaatccgttcgactgcgtttccatcaccgtctcctcgcccgaaacg
atccgtaactggtcgaagggtgaggttaaaaatccagagacgatcaactatcgtaccttc
aagcccgagccaggcggtctcttctgccaaaagatcttcgggcccgtccgcgactacgag
tgcgcgtgcggaaagtacaagcgcatcaaatacaaggacgtcgtctgcgatcgctgcggc
gtcgaagtcacgatcgcccgcgtccgtcgcgagcgcatgggccacatcgaactcgccgtt
cctgtcgctcacatctggttcttgaagagcatgccgagccgtctcggtcttctcctcgac
atgaccgcccgctcgcttgagcgcgtgatctactacgaaaacttcatggtcgtcgatccg
ggcaagaccccgctcgagatgaagcagctcctcaccgacaccgagtaccgccaggcgctc
gatgagtacggtgatgattccttcgtcgccaagatgggtgccgaagccgttcgcgaagcg
ctcggcaagatggatatggaagcgactgtcgccgagctccaggagcagatgcgcgcgacc
aaatcgaagcagatcaaaaagaagctctcaaagcgtctgaaggtcatccaaggcttcatc
cactcgaagtcccgtcctgaatggatggtcattgaagtcctccccgtgatcccaccggac
ctgcgtccgttggttcctctcgagggtggtcgttttgcgacctccgatctcaacgatctc
tatcgccgcgtcatcaaccgcaacaaccggttgaaaaatttgatgcagctgaagacgccc
gatgtgatcattcacaacgaaaagcgcatgctgcaggaagctgtcgacgcgctcttcgac
aacggtcgccacggccgtccagtgactggcgcaggcaaccgtcctttgaagtccctctcg
gacatgctcaagggcaagcagggtcgcttccgccaaaatcttctcggcaagcgtgtcgat
tattccggccgttccgtgatcgtcatcggtcctgagctgaagctcaaccagtgtggcctc
cccaagaagatggcgctggttctctttgagccattcatcatccgccgtcttaaggagctc
ggcttcgtgcacaccgtccgcggtgcccgcaagatgatcgagaagaagtctccagaagtc
tgggacattcttgaagaagtcacgaagggccacccagtcctactcaatcgcgcgcccacg
cttcaccgtctatcgatccaggctttcgagcctgtcctcatcgagggggaagcgatccgc
gttcacccactcgtctgtacggcttacaacgccgacttcgacggtgaccagatggctgtt
cacgtcccgctttcattggaagccgtgatggagtgcaaactcctcatgatggcgacgagc
aacatcttctcgccgtcctccggcaagccgatcctcactccttcgcaggacatcgttctt
ggtgcttactacctcacggttgagccccgtaagaaagtcgccaaaggcgagcgcatcccg
ctcctcagtggtcttcaggaagtgctcttcgcgaaaaccgatggcgcgcttaaggttcac
gattgggtcgagatcccgaatcccgatcacggtcgagataccgtgtacggtaacaaggag
cgcaagaccctccgcacgacggttggtcgcgtaattttcaaccagatctggcccgcgggt
ctcggctacgtgaacttcccagttccgaaggccaagctcggtgacctcattctgaatacc
tacaaggttgccggcgacgtcatcacgatcgagaccctcgacaagttgaaggagctcggt
ttccagaccgccatgcaggccggtatttccatcggtatcgatgacatgatcatccccgag
gacaaaaaggacatcgttgccgactcgcgcaaaaagatcaccgaggtcgaagcccagttc
aacaagggcatcatcaccgacggcgagcgctacaataaggtagtcgatatctggaccggt
gccaccgacaagatcgcgaaggcagtattcgcgaaactcgaaggcaacgacggccgtcct
gagatcaatccggtctacatcatgatggactccggtgcccgtggtaacaaacagcaggtt
cgtcagctgtgcggtacccgcggcctcatggccaagccatccggcgaaatcatcgaacgc
ccgattctgtcgtccttccgcgaaggtctgaccgttctcgaatacttcatctcgacgcac
ggcgcccgtaagggtctcgccgataccgcgctcaagaccgctgacgccggttacctcaca
cgtaaactgtgtgacgtggccatggacgttgtcatcgccgaagaagattgcggcacccgc
gacggtgtctggaagaaagcgatctttgaaggtgacgacgaaatcgtcggtctccgcgag
cgtatcatcggccgttgcgtgagcgacgacgtcttcaatccgctcaatccgaccgagctc
ctcgttggttccggcgaactcatcactgaggaaatcgccaccaagatcgaagaatccggc
ctcgagcgcgtgaagatcatgtcgcccctcacatcgaccagccgccacggcatcgatgcg
aagagctacggcatcaatcccgccaccaaccgtgtcgccaagaccggtgactcgatcggc
atcatcgccgctcagtcgatcggtgaacccggcacgcagctcacgatgcgtacgttccac
attggtggcgtcgctaccggtggattcaagactcctgaaattcgcgtccgctccggcggc
aaagtgaagtacaagggtctccgcctcgtgcagaccgctgacggtgcagccatcgttctt
aacaagactggctcgatccagatcatcgactccgaagatcgcgaactcgagagctacaac
atcgttgtcggttccttcctcaccatcggtgacggcgagaagatcgaaaagggtgccgtg
ctcgcgcagtgggatccgtacaacgttcccgtcctctctgaaaagggtggtacgctcgtc
ttcaaggacatgatccctggtgtcaccgtgaagcgcgaactcgacgaatcgtcgggccgc
atcgccacggtcgtcatcgagcataaagaagatctcaatcctcaggtcgaaatccgcgac
gcgtccaacaagccgctcgctgcttactcgattcccgtcggcgcgcagatttcggtcaac
gagggcgacatcatcgctcccggcgcgctcctcgcgaaaacgccacgtcaggcgtccaag
accaaggacatcacgggcggtctcccccgcatcgccgagctcttcgaagcccgccgtcca
aaagacgcggccgagatggctcgtatcgatggcgtcgtttccttcgaaggaacgatccgc
ggcaagcgcaagctcgtcgtgaaaaacgaggagacttcgcaggaggaggaacacctcatc
ccggccggcaagcacatcatcgtgcagccaggcgacgtcgtccacaagggccagcacctc
accgaaggctccgccgatccacacgagatcctcgagatcctcgggccatcggcgctgtac
gatttcctcatctcgcaggtgcaggaagtttaccgcctccaaggtgtgaccattaacgac
aagcacatcgaaatcatcatccgccagatgctccgcaaggtccgtatcacggatccaggt
gactccgagtacttctggggcgagcagatcgaccgcgctgccttcattgcgaataaccgt
cgcattgaagaagccggtggtaagcccgctgaagccgagccgatcctcttgggtatcacc
aaggcctcgctcgaaaccgagagcttcatctcggccgcttccttccaagagacgacgcgc
gtcctcaccgacgcctcgacgctcggcaagatcgatatgctcaagggcttcaaggaaaac
gtgatcatgggtcacctgatccctgctggcacgggtctcccgatgtacaaaaagctcaag
gtcacgctgccattcggcgacgagatccccgaggcggctccagtcgccgaggtctccgct
tcctga
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integrated database retrieval system
