Nibricoccus aquaticus HZ-65: CMV30_12240
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Entry
CMV30_12240 CDS
T05426
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vbh
Nibricoccus aquaticus HZ-65
Pathway
vbh03030
DNA replication
vbh03430
Mismatch repair
vbh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMV30_12240
03430 Mismatch repair
CMV30_12240
03440 Homologous recombination
CMV30_12240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vbh03032
]
CMV30_12240
03400 DNA repair and recombination proteins [BR:
vbh03400
]
CMV30_12240
Enzymes [BR:
vbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CMV30_12240
DNA replication proteins [BR:
vbh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CMV30_12240
DNA repair and recombination proteins [BR:
vbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CMV30_12240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
HHH_3
tRNA_anti-codon
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ATC66119
UniProt:
A0A290QBR9
LinkDB
All DBs
Position
complement(3064936..3068571)
Genome browser
AA seq
1211 aa
AA seq
DB search
MSSADQNFVHLHVHTDYSLLDGACRIDRLMDRAVGLGMKAMALTDHGNLFGAIEFYNAAK
AKSIKPLIGCEIYLTESSRLEKNGRSEDGKSYYHLGLLAKNLTGYQNLLKLVSDAHLKGF
YYKPRADWETLAKYANGLIGFTGCLAAIVPQHLLHDREEDARKACARFVEIFGRENYFVE
IQDHGIPEQLKIIPGLLKLAEEFNLKVIATNDVHYVRAEDAGPHDAMLCIQTGAKIEEEN
RMKFTGTQFYLKSRDEMAKLFAEVPESITNTQLVAEMCDLAIPFPKGSERYPRYPLPIEI
KEKFSPAEYLKQLCIDGLKKRYAVDYSAVAQQETVAARLAKLTDLPPGQKPQPPDYNNLA
PDQLLVVRTAYELSIITVTGFIDYFLVVWDFIAWAKVHNIPVGPGRGSGAGCLVAYLLEI
TNVDPIRFGLLFERFLNPERVSPPDFDIDFCMRRREEVINYVRDKYGRDCVANIITYGTL
GAKMVIRDVSRVHNLPYADADRLAKMIPDELNISLEDSITKSAELRTEVERNPVAKKIVN
QALVLEGMVRNTGKHAAGIIITDKPLDEFVPLTLQEEDVTVQYDMNAVGKLGLLKMDFLG
LKTLTVIDDAIANVRRTATPGFDIETIPFDDPKTYELLNVGKTVGVFQLESGGMQNASKL
VGISNIDDINAISALYRPGPMAFIPDYARGKKDPAAIHYPHQLLEPVLKETYGIIVYQEQ
VMECARVIGGYTLGGADMLRRAMGKKDVEGMAKERIKFVEGAGRLHKISEKQANEIFDLL
NKFAQYGFNKSHSAAYAVIAYQTAYLKANYPVQFMAAVLTAELGNSEKVAHFIAECTAMG
LTVLGPDVNESRENFTPVGDKIRFGLAGIKGVGEQAAQKIIEERDKNGPYADFEDLVKRI
DGRAINKRVLEHLAKTGGFDFSGASRKKLFDSIDSALAGAASQARDRAAGQFNMLDMLAE
PAPVRKTASKKTVHEETADDFTASERLQFEKELLGFYVSGHPMNAYSGLTEAIDTFHVSE
LLNQDDRTEFRLCGISGSIAKRLSKKDNRPWASFTLATKTASVALNMFADAFANYGQLLA
ENALIQVRGNIIVGQDGARINVKECSLLDYAVINDINRVTWLVHPEHKELPGFLQLLRET
LNKQVGSTKVSIAFVFENRVALNSDASNALGWKLNPARFQELRAHPAVAGVEIETKRLEL
KQEKRWGSKRS
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtccgccgatcagaacttcgtccatctccacgtccacaccgactacagcctgctc
gacggagcctgccgcatcgaccgcctgatggaccgcgccgtcggcctcggcatgaaggcc
atggccctaaccgatcacggcaatcttttcggcgccatcgaattctataacgccgccaag
gccaaaagcataaagcccctcatcggctgcgaaatctacctcaccgaatcctcccgcctc
gagaaaaacggccgctccgaagacggcaaaagctactaccacctcggcctcctcgccaag
aacctcaccggctaccaaaacctcctcaaactcgtctccgacgcgcacctcaaaggcttc
tattacaagccccgcgccgactgggaaaccctcgcaaaatacgccaacggcctcatcggg
ttcaccggctgtctcgccgccatcgttccccaacacctcctccacgaccgcgaggaggac
gcccgcaaagcctgcgcgcgcttcgtcgagatcttcggccgcgaaaactacttcgtcgaa
atccaggaccacggcatccctgagcagctcaaaattattcccggcctcctgaagctcgcc
gaggaattcaacctcaaggtcatcgcgaccaacgacgttcactacgtccgcgccgaagac
gccggcccgcacgacgccatgctctgcatccagaccggcgcgaagatcgaggaagagaac
cgcatgaaattcaccgggactcagttctacctgaagtcccgtgacgagatggcgaagctc
ttcgccgaagtccccgaatccatcacgaacacccaactcgtcgccgaaatgtgcgacctc
gcgatccccttccccaaaggctccgagcgctatccgcgttacccgctgccgattgagatc
aaagaaaaattctcaccggccgagtaccttaaacagctctgcatcgacggcctcaaaaaa
cgctacgccgtcgattactccgccgtcgctcaacaagaaaccgtcgccgcgcgcctcgcc
aagctcaccgatctcccgcccggccagaagccgcaaccgcccgactacaacaacctcgcg
cccgaccagctcctcgtcgtccgcaccgcctacgagctctcgatcatcaccgtcaccggc
ttcatcgattacttcctcgtcgtctgggatttcatcgcgtgggccaaagtccacaacatc
cccgtcggccccggccgcggctccggcgccggttgtctcgtcgcgtacctcctcgaaatc
accaacgtcgacccgatccgcttcggcctccttttcgagcgcttcctgaatcccgaacgc
gtttcgccgcccgacttcgatatcgatttctgcatgcgccgccgcgaagaggtcatcaac
tacgtgcgcgacaaatacggccgcgactgcgtggccaacatcatcacgtacggcacgctc
ggcgccaagatggtcatccgcgacgtctcccgcgttcataatttaccctacgccgacgcc
gaccgcctcgcgaagatgatccccgacgagctcaacatctcgctcgaagattccatcacc
aagtccgccgagctccgcaccgaggtagagcgcaaccctgtggccaagaaaatcgtcaac
caggccctcgtattggaaggcatggtacgcaacaccggcaaacacgccgccggcatcatc
atcaccgacaagccgctcgacgaattcgtcccgctcacgctccaggaagaagacgtcacc
gttcagtacgacatgaacgccgtcggcaaactcggcctgctgaagatggacttcctcggc
ctcaagacgctcaccgtcatcgacgacgccatcgccaacgtccgccgcaccgccacgccc
ggcttcgacatcgagaccataccgttcgacgaccccaaaacctacgaactcctcaacgtc
ggcaaaaccgtcggcgtcttccagctcgagtccggcggcatgcagaacgcgtccaaactc
gtcggcatttccaacatcgacgacatcaacgccatctccgcgctctaccgccccggcccg
atggcgttcatccccgactacgcccgcggcaaaaaagatcccgccgccatccactacccg
catcagctcctcgaacccgttcttaaagaaacctacggcatcatcgtctaccaagagcag
gtcatggagtgcgcccgcgtcatcggcggctacaccctcggcggcgccgacatgctccgc
cgcgccatgggcaaaaaagacgtcgaaggcatggccaaggagcgcatcaagttcgtcgaa
ggcgccggccgcctccacaaaatctccgaaaagcaggccaacgaaatcttcgatctcctc
aacaagttcgcccagtacggcttcaacaaatcccactccgccgcctacgccgtcatcgcc
tatcagaccgcgtacctgaaagccaactacccggtccagttcatggccgccgtgctcacc
gccgagctcggcaactccgaaaaagtcgcccacttcatcgccgagtgcaccgccatgggt
ctcaccgtcctcggccccgacgtgaacgaatcccgcgaaaacttcacgcccgtcggcgac
aagatccgcttcggcctcgctggtatcaaaggcgtcggcgaacaagccgcccaaaaaatc
atcgaagagcgcgataagaacggcccctacgccgacttcgaagacctcgtgaaacgcatc
gacggccgcgccatcaacaaacgcgtcctcgaacacctcgcgaaaaccggcggcttcgac
ttcagcggcgcttcccgcaaaaaactcttcgacagcatcgactccgcccttgccggagcc
gcctcgcaggcccgagaccgcgccgccggccagttcaacatgctcgacatgctcgccgag
cccgccccggtccgcaaaaccgcctcgaagaaaaccgttcacgaagaaaccgccgacgac
ttcaccgcctccgaacgtctccagttcgaaaaagaactcctcggcttctacgtctccggc
cacccgatgaacgcctactccggactcaccgaagcgatcgacaccttccacgtcagcgaa
ctcctcaaccaggacgaccgcaccgaattccgcctctgcggcatttccggcagcatcgcg
aaacgcctctcgaaaaaagacaaccgcccctgggcgtccttcaccctcgcgaccaaaacc
gcctccgtcgcgctcaacatgttcgccgacgccttcgccaactacggacagctcctcgcc
gaaaacgcgctcatccaggtcagaggcaacatcatcgtcggccaggacggcgcccgcatc
aacgtgaaggaatgctcgctgctcgactacgccgtcatcaacgacatcaaccgcgtcacc
tggctcgttcatcccgagcacaaagaactgccgggctttctccagctcctccgcgaaacg
cttaacaaacaagtcggcagcacgaaagtctcgatcgccttcgtcttcgaaaaccgcgtc
gccctcaacagcgacgccagcaacgctctcggctggaagctcaaccccgcccgcttccaa
gaactccgcgcccaccccgccgtcgccggcgtcgaaatcgaaaccaagcgcctcgaactc
aaacaagaaaaacgctggggctccaaacgctcctga
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