Nibricoccus aquaticus HZ-65: CMV30_14785
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Entry
CMV30_14785 CDS
T05426
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vbh
Nibricoccus aquaticus HZ-65
Pathway
vbh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vbh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMV30_14785 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbh03021
]
CMV30_14785 (rpoD)
Transcription machinery [BR:
vbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMV30_14785 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ATC65116
UniProt:
A0A290QFR1
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All DBs
Position
complement(3663993..3665807)
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AA seq
604 aa
AA seq
DB search
MPRKAKSAESDTHSEAVETAIERTQNATPEGGTPGADLAPGGINDKIRNLIRLSKEQGYL
TFDDINEALPESVENQEEIDNVLSILQNLEIEILEPDQVEDYKQRQEEAEEEESRTSQND
ILDDPVRMYLKQMGQVPLLTREQEVEISKRIENAELKAQEALFESAIVGRYIGTLGAKLL
NREERFDRIVIDKKIESREAYFKNLPKLVEGTQDGEANVADAWEEYLKTKDEAGKKKVHA
KFKKRESAYKAHFGKFFFKLKVYEEYLEQINPLLAEIEQIFAQIDRAKHPKTKKDAAIDT
KPLNARLRQIEAEQRLTAAELLEIVKKTGVHVREAHKAKTEMVEANLRLVISIAKKYTNR
GLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI
ETLNKVMQVQKQLLQEFGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDT
SFGDFIEDKSAENPYDMTAFSLLREKIIDVLDSLTDRERRVLSLRFGLIDGYSRTLEEVG
KQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFDAEQIDNAQNLLKQVSMKKPDGTTPP
LPVR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaagccaagtcagccgaatccgacacgcactcagaagccgttgaaaccgct
atcgaacgcacccagaacgccactccggaaggcggcactcccggcgctgaccttgccccc
ggcggtattaacgacaagattcgtaacctgatccgcctctcgaaggaacaaggctacctc
accttcgacgatatcaacgaagccctccccgagtccgtcgaaaaccaagaggaaatcgat
aacgtcctctccattctccagaacctcgagatcgagatcctcgagcccgatcaggtcgaa
gactataaacagcgccaggaagaggccgaagaggaagaatcccgcacctcgcagaacgac
attttggacgatcccgtccgcatgtacctcaagcagatgggccaggtcccgctgctaacc
cgcgagcaggaagtcgaaatctccaagcgcatcgaaaacgccgagctcaaggctcaggaa
gccctcttcgagtccgccatcgtcggccgttacatcggcaccctcggagccaaactcctc
aaccgcgaagagcgtttcgaccgcatcgtcatcgataagaaaatcgaaagccgcgaagcc
tatttcaaaaacctccccaaactcgtcgagggcacccaggacggcgaagccaacgtcgcc
gacgcctgggaagagtatctgaaaaccaaggacgaagcgggcaaaaagaaagtccacgcc
aagttcaaaaaacgcgaaagcgcctacaaggcccacttcggcaaattcttcttcaagctc
aaggtctacgaagagtacctcgagcagatcaacccgctgctggccgagatcgaacagatt
ttcgcgcagatcgaccgcgccaagcacccgaagaccaagaaagacgccgcgatcgacacc
aagccgctcaacgcccgtctccgtcagatcgaggccgaacagcgtctcactgccgccgaa
ctcctcgagatcgtcaaaaagactggcgtccacgtccgcgaagcccacaaagccaagacc
gagatggtcgaggccaatcttcgtctcgtgatctcaatcgctaagaagtacaccaaccgc
ggcctctccttcctcgatctcatccaggagggcaacatgggcctcatgaaggccgtcgaa
aaattcgagtaccgccgtggctacaagttctccacctacgccacctggtggatccgtcag
gcaatcacccgttccatcgccgatcaggcccgcaccatccgcatcccggtccacatgatc
gagacgctgaacaaagtcatgcaggtccagaagcaactcctccaggaattcggccacgaa
ccgacgcccgaggaagtcgccgacgagatgaatctccccgtcgagcgcgtgcagcagatc
atgaagatggcacaacaacccatctcgctacagtcccccgtcggcgacggcgacgacacc
agcttcggcgacttcatcgaagacaagtccgcggaaaacccgtacgacatgaccgccttc
tcgctcctgcgcgaaaaaatcatcgacgtcctcgactctctcaccgaccgcgaacgccgt
gttctctctctccgcttcggtctcatcgacggctacagccgcaccctcgaagaggtgggc
aaacagttcaaagtcacccgcgagcgcatccgtcagatcgaggccaaagccctccgcaaa
atgcgccacccgacgcgcattcgtcagctccacggctttttcgacgccgagcagatcgac
aatgcacagaacctgctcaagcaggtctccatgaagaagcccgacggtaccacgccacca
ctgcccgtccggtaa
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