Nibricoccus aquaticus HZ-65: CMV30_19085
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Entry
CMV30_19085 CDS
T05426
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vbh
Nibricoccus aquaticus HZ-65
Pathway
vbh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMV30_19085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbh03400
]
CMV30_19085 (mfd)
Enzymes [BR:
vbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMV30_19085 (mfd)
DNA repair and recombination proteins [BR:
vbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CMV30_19085 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATC65881
UniProt:
A0A290QML5
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All DBs
Position
4706547..4709948
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AA seq
1133 aa
AA seq
DB search
MPTATTPRHKLTGVCPPARGAVIEELTRTQPAPVWLVIADELKTAEQLAEDIAFFHAASA
PASSKRSLDVLIFPESMPDTRDMREAFTASSDRLAALSKLRALRNTSGSTRTTQLVLVST
PAALLQSVPALEQFATKEFTITKGQSQPFQALLEKLRELDYDSEAVCEAPGHYAIRGGII
DLYPVTATQPYRLDFFGDDIEDIRAFDPVTQRSGESVASITLSATPRVRLDPSKTGLADY
LSPQTHLLFVEPARLDETFSALARENISTENTPALPAILAKCAAAFGLSDLDETSALFET
PDIDVTLDTDSLVHHRSYPDDALVAQDRLVAEEDARADFLRKLVAWKKDGYAIDFVVSKE
GEEQRVREILAEDTAFKNLKPRFLRGTLNEGFRITRRGENSRSGQILVTETELFGRQRTR
RAGGTKRAIATRAQIDQLLDFSELVEGDFVVHLQHGIALYRGLTKVEAAGGLREVISLEF
DDHVTLHVPLQESHLISRYVGLSKTRPQLGRIGSNRWEKARKAAEVSTIDLAAELLRIQA
AREAQPGFAFPPDNTWQKEFEASFPYTETRDQLRAIDETKADLERARPMDRLICGDVGFG
KTEVAIRAAFKAVQGGRQVAVLVPTTVLAQQHMNTFRERMAGYPIAVEMVSRFRTRAEQA
KILAATTAGQVDILVGTHRVFQADVKFKDLGLVIIDEEQRFGVKHKEAFKKMRASVDVLS
MSATPIPRTLYMALTGARDMSVIETAPTNRHPVQTIVKTYDEKVVVDAIRHERRRGGQVF
YLHNRVQTIDLVAARLRELLPDLRIGVGHGQMDEKELELHMTEFVAGTYDVLVCTTIIES
GLDIPNCNTIIIEGADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLLEIARERLSAL
RTHNQLGAGFRIAMRDLELRGAGNLLGSEQSGHIVGVGFELYCQLLRQSVARLKGEKSAA
NIRANVKLDFVFIGEGAGTAIGTPSSASSSSSYAAIKAAEDDASGIVEIPKIQARIPSAY
IAETRLRIDFYRRLALADSPARLKEIDSDLRDRFGKFGDEVKALLLITEIRILAEQKNIL
SVETESTRLKCLRNSGRRDDFLMVGARFPRLTAPKPLLRLREILSFLINQPAP
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgccaccacaccgcgccataaactcaccggcgtctgcccgcccgcccgcggc
gccgtcatcgaggaactcacgcgcactcagcccgcgcccgtctggctggtcatcgccgac
gaactcaaaaccgccgagcaactcgccgaggacatcgccttcttccacgccgcctccgcg
cccgcgtcatcgaaacgctcgctcgacgtcctcatcttccccgagtccatgcccgatacg
cgcgatatgcgcgaagccttcaccgcctcctccgaccgcctcgccgccctctccaaactc
cgcgccctccgcaacacctccggctcgacccgcaccactcaactcgtcctcgtctccacg
cccgccgccctgctccagtccgtccccgccctcgaacaattcgccaccaaggaattcacc
atcaccaaaggccagtcccagcccttccaggctctcctcgaaaagcttcgcgagctcgac
tacgactccgaagccgtctgtgaagcccccggccattacgccatccgcggcggcatcatc
gacctgtatccagtaaccgccacccaaccttaccgactcgatttcttcggcgacgacatc
gaagacatccgtgccttcgatcccgtcacccaacgctccggcgaatccgtcgcctccatc
accctctccgccaccccgcgcgtccgcctcgatccctccaaaaccggcctcgccgattat
ctctcgccgcaaacgcatctcctcttcgtcgaacccgcccgcctcgacgaaaccttcagc
gccctcgcccgcgaaaacatctccaccgaaaatacgcccgcgctccctgccatcctcgcc
aaatgcgccgccgccttcggcctcagcgacctcgacgaaacctccgcgctcttcgaaacg
cccgatatcgacgtcaccctcgataccgacagcctcgtccaccaccgcagctaccccgac
gatgccctcgtcgcccaggaccgccttgtcgccgaagaagacgcccgcgccgacttcctc
cgcaaactcgtcgcctggaaaaaagacggctacgccatcgacttcgtcgtctccaaagaa
ggcgaagagcaacgcgtccgcgaaattctcgccgaagacaccgccttcaaaaatctcaag
ccccgcttcctccgcggcaccctcaacgaaggcttccgcatcacgcgtcgtggcgaaaat
tcccgcagcggccagatcctcgtcaccgagaccgaactcttcggccgccagcgcactcgc
cgcgcgggcggcaccaaacgcgccatcgccacccgcgcccagatcgaccagctcctcgac
ttctccgaactcgtcgaaggcgattttgtcgtccacctccagcacggcatcgcgctctac
cgcggcctcaccaaagtcgaagccgccggcggtctccgcgaagtcatctccctcgaattc
gatgaccacgtcacgctccacgtgccgctccaggagtcgcatttgatttcccgttacgtc
ggcctcagcaagacccgcccccaactcggccgcatcggttccaaccgctgggaaaaagcc
cgcaaagccgccgaagtttccaccatcgacctcgccgccgagctcctccgcatccaggcc
gcccgcgaggcccagcccggtttcgctttcccgcccgacaacacctggcagaaagaattc
gaggcctcgttcccctacaccgaaacccgcgaccaactccgcgccatcgacgaaaccaag
gccgacctcgaacgcgcccgcccgatggaccgcctcatctgcggcgacgtcggcttcggc
aaaaccgaggtcgccatccgcgccgccttcaaagccgttcaaggcggtcgccaggtcgcc
gtcctcgtccccaccactgtgctcgcccagcagcacatgaacacgtttcgcgagcgcatg
gccggctatccgatcgccgtggaaatggtttcccgttttcgcacccgcgccgagcaggcc
aaaattctcgccgccaccaccgctggccaggtggacattctcgtcggcacgcaccgcgtc
ttccaggccgatgtgaaattcaaagacctcggcctcgtcatcatcgacgaagagcaacgc
ttcggcgtgaaacacaaagaagccttcaaaaaaatgcgcgcctccgtggacgtcctctcg
atgagcgccactccgattccacgcacgctctacatggcactcaccggcgcgcgcgatatg
agcgtcatcgagaccgcgccgaccaaccgccaccccgtgcagaccatcgtcaaaacctac
gacgaaaaagtcgtcgtcgatgccatccgccacgaacgccgccgcggtgggcaggtgttc
tatctacacaaccgcgtccagacgatcgacctcgttgccgcccgcctacgcgaactcctc
cccgatctccgcatcggcgtcggccacggccagatggacgagaaagaactcgaactccac
atgaccgagttcgtcgccggcacctacgacgtgctcgtctgcaccacgatcatcgagagc
ggcctcgatatccccaactgcaacacgatcatcatcgaaggcgctgaccgcttcggcctt
tcccagctgtatcagctccgcggccgcgtcggccgcttcaaacaccaggcctacgcctat
ctcctccttcaccgccacacgcgtttgctggagattgcccgcgagcgcctcagcgcgctt
cgcacgcacaaccagctcggcgccggcttccgcatcgccatgcgcgacctcgaactccgc
ggcgccggcaacctcctcggctccgaacaaagcggccacatcgtcggcgtcggcttcgaa
ctctactgccagctcctccgccagtccgtcgcccgcctcaaaggcgaaaaatccgccgcc
aacatccgcgccaacgtgaagctcgacttcgtcttcatcggcgaaggcgccggaaccgcc
atcggcacgccatcatccgcctcctcgagctcgtcctacgccgccatcaaagccgccgaa
gacgacgccagcggcatcgtcgaaatccccaaaatccaggcgcgcatcccttccgcctac
atcgccgagacccgcctccgcatcgacttctaccgccgcctcgccctcgccgacagcccc
gcccgcttgaaggaaatcgactccgatcttcgcgaccgcttcggcaaattcggcgacgag
gtgaaagccctgctcctcatcaccgagatccgcattctggcggaacaaaaaaacatcctc
tccgtcgaaacagagtccacccgtttgaagtgcctgcgcaacagcggacgccgcgacgac
ttcctcatggtcggcgcccggtttccaaggttgaccgcccccaagcccctcctacgtttg
cgcgaaattctcagttttttaattaaccagcccgctccatga
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