Variovorax boronicumulans: CKY39_00990
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Entry
CKY39_00990 CDS
T05068
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKY39_00990 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbo03019
]
CKY39_00990 (recQ)
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_00990 (recQ)
Enzymes [BR:
vbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKY39_00990 (recQ)
Messenger RNA biogenesis [BR:
vbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKY39_00990 (recQ)
DNA repair and recombination proteins [BR:
vbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CKY39_00990 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
ATA57529
UniProt:
A0A250DU33
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All DBs
Position
complement(210021..211856)
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AA seq
611 aa
AA seq
DB search
MLHDVFGYARFRGAQQDIVEHVVGGGDALVLMPTGGGKSLCYQIPAIARQRAGRGVSVVV
SPLIALMHDQVGALHEAGVSAAFLNSTLDWEQTQDVERRMLRGEITLLYAAPERVNTPRF
LSQLDSLNERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYPGVPRIALTATADDL
TRADIVERLQLEEARQFVSSFDRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSR
KRVEDLATTLQGAGINALPYHAGLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVR
FVGHVDMPKNIEGYYQETGRAGRDGAPADAWMAYGLNDVVNQRRMIDESPAGEEFKQVMR
GKLDALLSLAEASDCRRVRLLGYFGEKSTPCGNCDNCLNPPQVWDGTDAARKLLSTIYRV
QQLSGISFGAGHIMDILRGKATEKVKQFGHERISTFGIGAEFSEVALRGVLRQLIATGAL
AVDAEAFNTLKLTEGSRAVLKGETSVSLRESVSSPAERKPRREKAAKGAPSPAAASLDDT
GKKRFEALKAWRAEVAKEHNLPAYVIFHDATLAAIAERAPATLEDLQGISGIGTKKLEAY
GAEVLRVCEAF
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atccttcacgacgtgttcggctacgcgcgctttcgcggggcccagcaggacatcgtggag
cacgtggtgggcggcggcgacgcgctggtgctcatgcccacgggcggcggcaagtcgctc
tgttatcagattccggccatcgcgcggcagcgcgcggggcgcggcgtgtcggtggtggtg
tcgccgctgatcgcgctgatgcacgaccaggtcggcgcgctgcacgaggcgggggtgagc
gcggcgttcctcaactccacgctcgactgggagcagacgcaggacgtggagcgccgcatg
ctgcgcggcgagatcacgctgctgtacgcggcgcccgagcgcgtgaacacgccgcgcttt
ctgtcgcagctcgattcgctgaacgagcgcggcaagctctcgctgttcgccatcgacgag
gcgcattgcgtgagccagtggggccacgacttccgccccgagtaccgcgcgctcaccgtg
ctgcacgagcgctacccgggcgtgccgcgcatcgcgctcacggccacggccgacgacctc
acgcgcgccgacatcgtcgaacggctgcagctggaagaagcgcgccagttcgtctccagc
ttcgaccggccgaacatccgctacaccatcgtcgagaagaaggacgccaccacgcagctg
ctgcgcttcatcgagcgcgagcacgagggcgatgcgggcgtggtctattgccagtcgcgc
aagcgcgtggaagacctcgcgacgacgctgcagggcgccggcatcaacgccctgccgtac
cacgcgggcctcgatgcggcggtgcgccagaagcaccaggaccgcttcctgcgcgaagaa
ggcatcgtgatggtcgcgaccatcgccttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtcggccacgtcgacatgcccaagaacatcgagggctactaccaggaaaccggccgc
gcgggccgcgacggcgcccccgccgacgcctggatggcctacggcctgaacgacgtggtg
aaccagcgccgcatgatcgacgagagcccggccggcgaagagttcaagcaggtgatgcgc
ggcaagctcgacgccctgctctcgctggccgaggccagcgactgccggcgcgtgcgcctg
ctgggctacttcggcgagaagagcacgccctgcggcaactgcgacaactgcctgaaccca
ccgcaggtgtgggacggcaccgatgccgcgcgcaagctgctgagcaccatctaccgcgtg
cagcagctcagcggcatcagcttcggcgccggtcacatcatggacatcctgcgcggcaag
gcgaccgagaaggtcaagcagttcgggcacgagcgcatcagcaccttcggcatcggcgcg
gagttcagcgaggtggcgctgcgcggcgtgctgcgccagctgatcgccaccggcgcgctc
gcggtggacgcggaagccttcaacacgctgaagctcaccgagggctcgcgcgcggtgctc
aagggcgagacctcggtgtcgctgcgcgagtcggtgtcgtcaccggccgagcgcaagccc
cggcgcgagaaggccgccaagggcgcgccgtcgccggcggcggcctcgctcgacgacacc
ggcaagaagcgcttcgaggcactcaaggcctggcgcgccgaggtggcgaaggaacacaac
ctgccggcctacgtgatcttccacgacgccacgctggccgccattgccgagcgcgcgccc
gcgacgctcgaagacctgcagggcatcagcgggatcggcacgaagaagctcgaagcctac
ggcgccgaggtgctccgggtctgcgaagccttctga
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