Variovorax boronicumulans: CKY39_02325
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Entry
CKY39_02325 CDS
T05068
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03420
Nucleotide excision repair
vbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKY39_02325
03430 Mismatch repair
CKY39_02325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_02325
Enzymes [BR:
vbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKY39_02325
DNA repair and recombination proteins [BR:
vbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKY39_02325
MMR (mismatch excision repair)
Other MMR factors
CKY39_02325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
NACHT
AAA_12
AAA_11
HHH_5
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATA52186
UniProt:
A0A250DCY1
LinkDB
All DBs
Position
508663..510780
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AA seq
705 aa
AA seq
DB search
MQTPASPVLSTPPKTQAERLAAALAALNDDQRAAVEHGVGAAVGADHRPLLVIAGAGSGK
TSTLAHRVAHLIADGVDPQRLLLLTFSRRAAQEMERRAGQVLARVLGLKSERPPALPWAG
TFHGIGARLLREYAAQIGLDESFTIHDRGDAEDLMGLVRHELGLSSTVNRFPRKGTCLSI
YSRCVNTRAPLAVVLKDSFPWCAEWEAQLKTLFGAYVEAKQQQNVLDYDDLLLYWAEMVA
EPALAAHVGARFDHVLVDEYQDTNLLQAEILRAMKPDGRGVTVVGDDAQSIYSFRGATVR
NILDFPSQFSQAARIVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPSAGKPVLV
LVPDEAGQARWVADKILAHREGGLALKSQAVLFRTSSHSAALELELARRNIPFVKFGGLK
FLEASHVKDLLAVLRFAQNPRGRMAGFRVTQLIPGVGPATGTRLLDAMDQAADPAAAVRD
FVPPSAAREQWADFAQAYAALRAPSLQWPADVEVAMQWYQPHLERLYEDTSGVRRADVEQ
LARLAAGYGSRERFLTELTLDPPEATSDRPGPPSLDEDYLILSTIHSAKGQEWNSVHVIN
VVDGCMPADVAQGAHELEEERRLLYVAMTRARDHLHLVMPQRFHITQQAARGDRHLYANR
TRFITEADLAGFELQTWPPPPVLPPAVPPPAAVIDLRNRMRAAWR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgcagacccctgcgtcccccgttctttccaccccgccgaagacgcaagccgagcgcctg
gccgcggcgctcgccgcgctcaacgacgaccagcgcgcggcggtcgagcatggcgtgggc
gcggcggtcggcgccgaccaccggccgctgctcgtgatcgccggcgccggctcgggcaag
accagcacgctggcgcaccgcgtggcgcacctgatcgcggacggggtcgatccgcagcgg
ctgctgttgctcaccttctcgcgccgcgccgcgcaggaaatggagcgccgcgcgggccag
gtgctggcgcgcgtgctgggcctgaagtcggagcgcccgcccgcgctgccgtgggccggc
accttccacggcatcggcgcacggctgctgcgcgagtacgccgcgcagatcgggctggac
gagagcttcaccatccacgaccgcggcgacgccgaagacctcatggggctggtgcggcat
gagctgggcctgtcgtccacggtcaaccgcttcccgcgcaagggcacctgcctgtcgatc
tactcgcgctgcgtgaacacgcgcgcgccgctggccgttgtgctgaaagacagctttccc
tggtgcgccgagtgggaggcgcagctcaagacgctgttcggcgcctacgtcgaggccaag
cagcagcagaacgtgctcgactacgacgacctcttgctctactgggccgagatggtcgcc
gagcccgcgctggccgcgcacgtcggcgcgcgcttcgaccacgtgctggtcgacgagtac
caggacaccaacctgctgcaggccgagatcctgcgcgcgatgaagcccgacgggcgcggc
gtgacggtggtgggcgacgacgcgcagtcgatctattcgttccgcggcgccacggtgcgc
aacatcctcgactttccctcgcagttctcgcaggccgcgcggatcgtcacgctggagcgc
aactaccgctcgacgcaaccgatcctcgacgtgtcgaaccgcgtcatcgcgcaggccgcc
gagcggcacgccaagacgctgtggaccgacaagccctcggccggcaagccggtgctggtg
ctcgtgcccgacgaggccgggcaggcgcgctgggtggccgacaagatcctggcgcaccgc
gagggcgggctggcgctgaagtcgcaggcggtgctgtttcgcacctcgtcgcacagcgcg
gcgctggagctggagctggcgcggcgcaacatcccgttcgtgaagttcggcgggctcaag
ttcctcgaggcctcgcacgtgaaggacctgctcgccgtgctgcgtttcgcgcagaacccg
cgcgggcgcatggcgggcttccgggtcacgcagctcattcccggcgtgggcccggccacc
ggcacgcgcctgctcgacgcgatggaccaggcggccgacccggccgcggccgtgcgcgac
ttcgtaccgccgtcggccgcgcgtgaacagtgggccgacttcgcccaggcctacgccgcc
ttgcgcgcgccgtcgctgcagtggccggccgacgtcgaggtggccatgcagtggtaccag
ccgcacctggagcggctgtacgaagacacctcgggcgtgcgccgtgccgacgtcgagcag
ctggcgcggctggcggccggctatggctcgcgcgagcgctttctcacagagctcacgctc
gacccgcccgaagccaccagcgaccggcccggcccgccctcgctcgacgaggactacctg
atcctgtcgaccatccattcggccaagggccaggagtggaattcggtgcacgtcatcaac
gtggtcgatggctgcatgccggccgatgtggcccagggcgcgcacgagctggaagaagaa
cggcgcctgctctacgtggcgatgacgcgggcccgcgaccacctgcacctggtgatgccg
cagcgcttccacatcacgcagcaggcggcgcgtggcgaccggcacttgtacgccaaccgc
acccgcttcatcaccgaggccgacctggcgggcttcgagctgcagacctggccgccgccg
ccagtgctgccgcccgcggtgccgccaccggccgcggtgatcgacctgcgcaaccgcatg
cgcgccgcctggcgctga
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