KEGG   Variovorax boronicumulans: CKY39_04600
Entry
CKY39_04600       CDS       T05068                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
vbo  Variovorax boronicumulans
Pathway
vbo00470  D-Amino acid metabolism
vbo00550  Peptidoglycan biosynthesis
vbo01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    CKY39_04600
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    CKY39_04600
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:vbo01011]
    CKY39_04600
Enzymes [BR:vbo01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     CKY39_04600
Peptidoglycan biosynthesis and degradation proteins [BR:vbo01011]
 Precursor biosynthesis
  Amino acid ligase
   CKY39_04600
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C MurD-like_N Sacchrp_dh_NADP NAD_binding_8 DUF6798
Other DBs
NCBI-ProteinID: ATA52574
UniProt: A0A250DE80
LinkDB
Position
1020161..1022446
AA seq 761 aa
MRHLKDLPVLILGLGASGLAMARWCARHGAVVTVADTREAPASLATLQAELPDATFIGGP
FTAALVEGTPIRAVYRSPGLSPATLAPVVDAAKAVGLVVGGELDLFARALLDLQTVEVPV
VEAEAEVPVETAVAEPVVETPAQAELALSEEAPVAEASVVEAPEVPAPEAAAVVEGEAEA
DAPVEATDVVALTDAVAPEPTAESTEAALPVDATAAEAEPAAPVEPTEATEPTPPAMAEA
MPRDASLSVPVTPPTEDVVAEGVTTEDATTEDGAAPAAAETPAVSPAPAATVSRLPTPGK
PYVPTAAREAAEFVAKIAELSATNPASAAVEEEATPQLELVPEPEPEAPKGYTPAVLAIT
GTNGKTTVTSLTGQLVERAGKTVAVAGNIGPTLLDTLAGHLDAGTLPDVWVLELSSFQLD
GVQGFEPTAATVLNLTQDHLDWHGDMPAYAAAKARIFGAKGLMILNRDDAGVMAMLPPPV
KVRLQRPQIRTHVTFGGAMPLRPGDYGIERINGVAWLVRALEADETQKRKRGAVVEEELF
FQRLMPADALRIRGRHNAMNALAALALASAADCPLGPMLYGLREYRGEPHRVEPIAIVDE
VEFFDDSKGTNVGATVAALSGLGEERRVVVILGGEGKGQDFEPLADPVRQYARAVVLIGR
DAPLIEAALASTGVSLKHAGSMEEAVKLAAARAHPGDAVLLSPACASFDMFKDYAHRAEV
FCEAVEAYADSPREAVGGDDAVVSYVPSASLSTAGSMEDPI
NT seq 2286 nt   +upstreamnt  +downstreamnt
atgcggcacctgaaagacctccccgttctcatcctcggcctcggcgcgtccgggctggcg
atggcgcgctggtgcgcgcgccacggcgcggtcgtgaccgtggccgacacgcgcgaggcg
cccgcctcgctcgcgacgctgcaggccgaactgcccgacgccaccttcatcggcgggccg
ttcacggccgcgctggtcgaaggcacgccgatccgcgccgtgtaccgctcgccgggcctg
tcgcccgcgacgctggcgccggtcgtcgacgccgccaaggccgtgggcctcgtggtcggc
ggcgagctggacctgttcgcgcgcgcgctgctcgacctgcagacggtcgaggtgccggtg
gtggaggccgaagcggaagtgccggtcgaaaccgccgtggccgagcctgtcgttgaaacg
ccggcccaggctgaactggccttgagcgaagaagcccctgtggcggaggcttcggtggtc
gaggcgccggaagtgcctgcgccggaggctgctgcggttgttgaaggcgaagccgaagcg
gatgcgcctgttgaagcaactgacgttgttgcactcactgacgctgtggctcccgagccg
acggcagagtcgaccgaagccgcactgccagtcgatgcgactgccgcagaagccgaaccc
gccgctcccgtcgaaccgaccgaagccaccgaacccacaccgcccgccatggccgaagcc
atgccgcgcgatgcatcgctgagcgtgccggtgacgccgcccaccgaagacgtcgtcgcc
gaaggcgtcacgacggaagacgccaccacggaagacggcgcagcaccagccgccgccgag
acgcccgccgtgtcgcccgcacccgccgccaccgtctcccgcctgcccacccccggcaag
ccctacgtgcccaccgcggcgcgcgaggccgccgagttcgtcgccaagatcgccgagctg
tccgccaccaacccggcgtcggccgcggtcgaggaagaggccacgccgcagctcgaactc
gtgcccgaacccgagcccgaagcgcccaagggctacacgcccgccgtgctcgccatcacc
ggcaccaacggcaagaccaccgtcacctcgctcaccggccagctggtcgaacgcgcgggc
aagaccgtggccgtggccggcaacatcggccccacgctgctcgacacgctggccgggcac
ctcgacgccggcacgctgcccgacgtgtgggtgctcgaactctcgagcttccagctcgac
ggcgtgcagggcttcgagcccacggccgcgaccgtgctcaacctcacgcaggaccacctc
gactggcatggcgacatgccggcctacgcggccgcgaaggcgcgcatcttcggcgccaag
ggcctgatgatcctcaaccgcgacgacgccggcgtgatggccatgctgccgccgccggtc
aaggtgcggctgcagcgtccgcagatccgcacccacgtcaccttcggtggcgcgatgccg
ctgcgcccgggcgactacggcatcgagcgcatcaacggcgtggcctggctggtgcgcgcg
ctggaagccgacgaaacgcaaaagcgcaagcgcggcgcggtggtggaagaagagctcttc
ttccagcgcctcatgcccgccgacgcgctgcgcatccgcggccgccacaacgccatgaat
gccctggccgcgctcgcgctcgccagcgccgccgactgcccgctgggcccgatgctctac
ggcctgcgcgagtaccgcggcgagccgcaccgcgtcgagcccatcgccatcgtggacgag
gtcgagttcttcgacgacagcaagggcaccaatgtcggcgccaccgtggccgcactgagc
ggcctcggcgaggagcgccgcgtggtcgtgatcctcggcggcgaaggcaagggccaggac
ttcgagccgctggccgaccccgtgcgccagtacgcgcgcgccgtcgtgctcatcggccgc
gacgcgccgctgatcgaggccgcgctggcctccaccggcgtctcgctgaagcacgcgggc
tcgatggaagaggccgtgaagctcgccgccgcgcgcgcccaccccggcgatgccgtgctg
ctgtcaccggcctgtgcgagcttcgacatgttcaaggactacgcgcaccgcgccgaggtg
ttctgcgaggccgtggaggcttacgccgacagcccgcgcgaggccgtgggtggtgacgac
gcggtggtgtcgtacgtgcccagcgcgtcgctgtccaccgccggatcgatggaggacccg
atttga

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