Variovorax boronicumulans: CKY39_04650
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Entry
CKY39_04650 CDS
T05068
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo00260
Glycine, serine and threonine metabolism
vbo00460
Cyanoamino acid metabolism
vbo00630
Glyoxylate and dicarboxylate metabolism
vbo00670
One carbon pool by folate
vbo00680
Methane metabolism
vbo01100
Metabolic pathways
vbo01110
Biosynthesis of secondary metabolites
vbo01120
Microbial metabolism in diverse environments
vbo01200
Carbon metabolism
vbo01230
Biosynthesis of amino acids
vbo01240
Biosynthesis of cofactors
vbo04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
CKY39_04650
09102 Energy metabolism
00680 Methane metabolism
CKY39_04650
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
CKY39_04650
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
CKY39_04650
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
CKY39_04650
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
CKY39_04650
Enzymes [BR:
vbo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
CKY39_04650
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Motif
Pfam:
SHMT
Beta_elim_lyase
Aminotran_1_2
DegT_DnrJ_EryC1
OKR_DC_1
TIR_2
Motif
Other DBs
NCBI-ProteinID:
ATA52584
UniProt:
A0A250DE90
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Position
1033079..1034401
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AA seq
440 aa
AA seq
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MPAALHRRSWVPAASEDHVLAIAADAAARDASGVAAEIERLVADSHRIHDIDGLNLNPAT
NVMNPAAEALLSRGLGSRPSLGYPGDKYEMGLEAIERIEVVAAELAAEVFGARFAEVRVS
SGALSNLYVFMATCQPGDTIIAPPPAIGGHVTHHAAGAAGLYGLKTVPAPVDADGYSVDV
VALAKLAREVKPKLITIGGSLNLFPHPVPAIREVADSVGAKVLFDAAHLSGMVAGKAWPQ
PLEEGAHAITMSTYKSLGGPAGGLIVSNDAALMERIDAIAYPGLTANSDAGRTAALARGL
LDWKVHGAAYAAAMRDTAQALARALEAQGLPVFAKARGFTQSHQFALEAARWGGGQRAAK
QLAQGGLLACGIGLPIAPVDGDINGLRLGVPEIVRLGFTPEDMPQLAGWIARALAGDAVS
VAAEVRERRRRLGDLRYIVR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagcccttcaccgccgttcctgggttcccgccgccagcgaggaccacgtgctc
gccattgccgccgacgccgccgcgcgcgacgcgtcgggcgtggccgccgagatcgaacgc
ctcgtggccgacagccaccgcatccacgacatcgacgggctgaacctcaacccggccacc
aacgtgatgaaccccgccgccgaggcgctgctgtcgcgcgggctgggttcgcgcccgtcg
ctgggctacccgggcgacaagtacgagatggggctggaagccatcgagcgcatcgaggtc
gtcgccgccgagctggcggccgaggtgttcggcgcgcgcttcgccgaggtgcgcgtgagc
tcgggcgcgctgtcgaacctctacgtgttcatggcgacctgccagcccggcgacacgatc
atcgcgccgccgcccgccatcggcggccatgtgacgcaccatgcggcgggcgcggccggg
ctctacggcctgaagaccgtgccggcgccggtcgatgccgatggctactcggtcgacgtg
gtggcgctggccaagctggcgcgcgaggtgaagcccaagctcatcaccatcggcggcagc
ctcaacctgttcccgcacccggtgcccgcgatccgcgaggtggccgacagcgtgggcgcc
aaggtgctgttcgatgccgcgcacctgtcgggcatggtggccggcaaggcctggccgcag
ccgctcgaagagggcgcgcacgcgatcacgatgagcacctacaagagcctgggcggcccg
gccggcgggctgatcgtgtcgaacgacgcggcgctgatggagcgcatcgacgccatcgcc
taccccggcctcacggccaactcggacgcgggccgcaccgcggcgctggcgcgcggcctg
ctcgactggaaggtgcacggcgcggcctatgcggcggcgatgcgcgacaccgcgcaggcg
ctcgcacgcgcgctcgaagcgcaaggcctgccggtgttcgccaaggcacgcggcttcacg
cagtcgcaccagttcgcgctcgaggctgcgcgctggggcggcgggcaacgcgccgcgaag
cagctggcccagggcggcctgctggcctgcggcatcggcctgccgatcgcaccggtcgac
ggcgacatcaacggcctgcgcctgggcgtgcccgagatcgtgcggctgggcttcacgccc
gaggacatgccgcagctggccggctggatcgcgcgggcgttggctggcgatgcggtgtcg
gtggccgccgaggtgcgcgaacgccgccggcgcctgggcgacctgcgctacatcgtgcgc
tga
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