Variovorax boronicumulans: CKY39_04695
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Entry
CKY39_04695 CDS
T05068
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vbo
Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vbo03016
]
CKY39_04695
Enzymes [BR:
vbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CKY39_04695
Transfer RNA biogenesis [BR:
vbo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CKY39_04695
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
ATA52592
UniProt:
A0A250DEA4
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All DBs
Position
complement(1041983..1044052)
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AA seq
689 aa
AA seq
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MFVLFEEAGKYLGGRILSEAEASAQVELETGKRVKVKGANIVLRFEKPSPAELMAEARAL
AAAMDLDLAWEFAAEGEFGFADLAADYFSDKPSLAQQAAALFALFEAPHYFRRAGKGRFK
KAPAEIVQQALAAIEKKKAIQAQIVEWAGQLAEGVCPPPIREQLYKILFKPDKNAPEYKA
VVDAARATQRPPLDLLERAGAIDSPYQFHWRRFLFENFPKGTGFPALAAPAVADDLPLAE
GVRAFSIDDSQTTEIDDALSVQGMGSGTITVGIHIAAPGLALTPGSAIDAVARARMSTVY
MPGYKITMLPDEVVDTYTLLEGGDRPAVSLYARFDEATLELQGTETKLERVPIVANLRHD
QLDAVVTQPWLEDATFTSDNTPDAAAKLRAPLSFLFRLAKHLKAQREVVRGKPENFSRPD
YNFRLVGNDGAEPTGNEQVQISTRQRGAPLDLIVSEAMILANSSWGGWLGELGVPGLYRS
QASLAPGIKVRMGTRALPHAGLGVKSYAWSTSPLRRYTDLVNQWQIIAAARHGKTAALAA
PFKPKDADLFSILSGFDAAYATYNAYQGGMERFWTLKYLQQQGITELEATVIKDIPNGAL
VRADTLPLVFPVAGQQERGARVRVKLGEIDEIALDVSGTVLERFDVPQADAAAADGGEDD
EEEVAGPIAIAVDLSDTEAAPDPATTTPA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtattgtttgaagaagccggcaaatacctcggcggccgcatcctgtcggaagcc
gaagcctcggcacaggtcgagctcgagaccggcaagcgcgtcaaggtcaagggcgccaac
atcgttctgcgtttcgagaagccgtccccggccgagctgatggcggaggcgcgcgcgctc
gccgccgccatggacctcgacctcgcctgggaattcgcagccgaaggcgagttcggcttt
gccgacctggcggccgactatttcagcgacaagccctcgctggcgcagcaggccgccgcg
ctgttcgcgctgttcgaggcgccgcactacttccgccgcgcgggcaaggggcgcttcaag
aaggcgccggccgagatcgtgcagcaggcgctggccgccatcgagaagaagaaggccatc
caggcgcagatcgtcgaatgggcgggccagctcgccgagggcgtgtgcccgccgccgatc
cgcgagcagctctacaagatcctgttcaagcccgacaagaacgcgcccgagtacaaggcc
gtggtcgacgccgcgcgcgccacgcagcgcccgccgctcgacctgctggagcgcgccggc
gccatcgattcgccctaccagttccactggcggcgcttcctgttcgagaacttccccaag
ggcaccggctttcccgcgctcgcggcgccggccgtcgccgacgacctgccgctggccgaa
ggcgtgcgggccttctcgatcgacgactcgcagaccaccgaaatcgacgacgcgctgtcg
gtgcagggcatgggcagcggcaccatcacggtcggcatccacatcgccgcgccgggcctg
gcgctcacgccgggcagcgccatcgacgccgtggcgcgcgcgcgcatgtccaccgtgtac
atgccgggctacaagatcaccatgctgcccgacgaggtggtcgacacctacacgctgctc
gaaggcggcgaccgcccggccgtgtcgctctatgcacgcttcgacgaagccacgctcgag
ctgcagggcaccgagacgaaactcgaacgcgtgccgatcgtcgccaacctgcgccacgac
cagctcgacgccgtcgtcacgcagccctggctcgaagacgccaccttcacctccgacaac
acccccgacgccgccgcgaagctgcgcgcgccgctctccttcctgttccgcctggccaag
cacctgaaggcgcagcgcgaagtggtgcgcggcaagcccgagaacttcagccggcccgac
tacaacttccgcctcgtcggcaacgacggcgccgagcccaccggcaacgagcaggtgcag
atcagcacgcgccagcgcggcgcgccgctcgacctgatcgtgtccgaggccatgatcctg
gccaacagcagctggggcggctggctcggcgagctcggcgtgccgggcctgtaccgcagc
caggccagcctggcgcccggcatcaaggtgcgcatgggcacgcgcgcgctgccgcacgcg
ggcctgggcgtgaagagctacgcctggagcacctcgccgctgcgccgctacaccgacctc
gtgaaccagtggcagatcatcgcggccgcgcgccacggcaagaccgccgcactggccgcg
ccgttcaagccgaaagacgccgacctgttctccatcctctcgggcttcgatgcggcctac
gctacgtacaacgcctaccagggcggcatggagcgcttctggacgctgaagtacctgcag
cagcagggcatcaccgagctcgaggccacggtcatcaaggacattcccaacggcgcgctg
gtgcgtgccgacacgctgccgctggtgttcccggtggccggccagcaggagcgcggcgcg
cgcgtgcgcgtgaagctcggcgagatcgacgagatcgcgctcgacgtgagcggcaccgtg
ctcgaacgcttcgacgtgccgcaggccgatgccgcagccgctgacggcggcgaggacgac
gaggaagaagtcgccggcccgatcgccatcgcggtcgacctgagcgacaccgaggccgca
cccgacccggcgacgaccacgcctgcatga
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