Variovorax boronicumulans: CKY39_04800
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Entry
CKY39_04800 CDS
T05068
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
vbo
Variovorax boronicumulans
Pathway
vbo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CKY39_04800
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vbo02022
]
CKY39_04800
02035 Bacterial motility proteins [BR:
vbo02035
]
CKY39_04800
Two-component system [BR:
vbo02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
CKY39_04800
Bacterial motility proteins [BR:
vbo02035
]
Pilus system
Twitching motility proteins
CKY39_04800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA
AAA_5
HTH_23
HTH_28
HTH_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ATA52607
UniProt:
A0A250DE03
LinkDB
All DBs
Position
complement(1066834..1068384)
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AA seq
516 aa
AA seq
DB search
MSSLPSSAAAPRPAQILVIDDEPDLRTLYELTLLREGYRVEAAGSVSEAWQHLEAGRFDA
VITDMRLPDGEGMEIIHRIQKDQRSERCVVMTAYGSAENAVEALKAGAFDYLTKPVDLKQ
FRAVVASAVQANRAAVVVPQKPAPQAAGHGGERPDVLSVTRSGATALDRLVGDSDPMRLV
KSRIAKVARGMAPVLVRGESGTGKELVARAVHGCSQRSEGPFVAVNCGAIPENLLEAEFF
GAKKGSYTGSSQDRDGYFQAARDGTLFLDEIGDLPLAMQSKLLRAIQERSVRAIGSTQED
AVDVRIVSATHKDLHAEVLAGRFRQDLFYRLNVIEIAVPALRERREDLPALCTALLARIA
QDGGLPVPRLSDALLQRLAQHPLDGNVRELENLLHRAVALNDGDELHIDLMGAMTPMPAA
PRGESAEAPPAVAVAAAPAPAAEPKPAPPPLPSDLQAWLDQQEREILVRALHESGFNRTA
AAARLGMSLRQIRYRIARLGISTPNGDDGTTAHADD
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccctcccgtcttccgccgccgccccgcgccccgcgcagatcctcgtcatcgac
gacgaacccgacctgcgcacgctctacgaactcacgctgctgcgtgaaggctaccgggtg
gaagcggcgggcagcgtgtccgaagcctggcagcacctcgaagccggccgcttcgacgcc
gtgatcaccgacatgcggctgcccgacggcgaaggcatggagatcatccaccgcatccag
aaagaccagcgcagcgagcgctgcgtggtcatgaccgcctacggctcggccgagaacgcg
gtcgaggcgctgaaggccggcgccttcgactacctcacgaagccggtcgacctgaagcag
ttccgcgccgtggtggcgtcggccgtgcaggccaaccgcgccgcggtggtcgtgccgcag
aagccggcgccgcaggccgcgggtcacggcggcgaacgccccgatgtgctgtcggtgacg
cgcagcggcgccaccgcgctcgaccggctggtcggcgactccgacccgatgcgcctggtc
aagtcgcgcatcgccaaggtggcgcgcggcatggcgccggtgctggtgcgcggcgaatcg
ggcaccggcaaggagctggtcgcgcgcgccgtgcacggctgcagccagcgcagcgaaggc
cccttcgtcgcggtgaactgcggcgcgatccccgagaacctgctcgaggccgagttcttc
ggcgccaagaagggctcgtacaccggctcctcgcaagaccgcgacggctacttccaggcg
gcgcgcgacggcacgctgttcctcgacgaaatcggcgacctgccgctggccatgcagtcg
aagctgctgcgcgccattcaagagcgcagcgtgcgcgccatcggctcgacgcaggaagac
gcggtcgacgtgcgcatcgtgagcgccacccacaaggacctgcacgccgaggtgctggcc
ggccgcttccggcaggacctgttctaccgcctcaacgtgatcgagatcgccgtgcccgcg
ctgcgcgagcgccgcgaagacctgcccgcgctgtgcaccgcgctgctcgcgcgcatcgcc
caggacggcggcctgcccgtgccgcgcctgtccgacgcgctgctgcagcgcctggcccag
cacccgctcgacggcaacgtgcgcgagctcgagaacctgctgcaccgcgcggtggcgctg
aacgacggcgacgagctgcacatcgacctgatgggcgcgatgacgccgatgccggccgcg
ccgcgcggcgaatccgctgaagcgccccccgccgttgcggtggctgcggcccccgcgccg
gcggccgaacccaagcccgcgccgccgccgctgccttccgatctgcaagcctggctcgac
cagcaggagcgcgagatcctcgtgcgcgcgctgcacgagagcggcttcaaccgcacggcc
gccgccgcgcggctgggcatgagcctgcgccagatccgctaccgcatcgcgcgcctgggc
atctccacgcccaacggcgacgacggcaccaccgcgcatgccgacgactga
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