Variovorax boronicumulans: CKY39_05755
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Entry
CKY39_05755 CDS
T05068
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo00300
Lysine biosynthesis
vbo00470
D-Amino acid metabolism
vbo01100
Metabolic pathways
vbo01110
Biosynthesis of secondary metabolites
vbo01120
Microbial metabolism in diverse environments
vbo01230
Biosynthesis of amino acids
Module
vbo_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CKY39_05755 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CKY39_05755 (lysA)
Enzymes [BR:
vbo01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
CKY39_05755 (lysA)
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ATA52772
UniProt:
A0A250DET2
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All DBs
Position
complement(1284535..1285812)
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AA seq
425 aa
AA seq
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MTTNTPLPGHPHIAHRDGALHVEGVALDALARTHGTPLFVYSKQWMLDALAAYQRGFEDR
DALICYAMKANSSLGVLRVFAEAGCGFDIVSGGELSRVLAVGADPKKIIFSGVGKTRAEM
RQALAAGIACFNVESEAELDVLNEVALAEKVRAPISIRINPNVDPKTHPYISTGLKGNKF
GIAHDRAVQAYQHAARLPGLEVVGIDCHIGSQITEASPYLDACDRVLDLVEAIEAAGVPI
HHLDFGGGLGIDYNGEVPPKADALWQQLLAKLDARGFGQRKLVIEPGRSLVGNAGVCVTE
VLYTKPGEDKNFCIVDAAMNDLPRPAMYQAFQKIVPLRERAGDAPTYDVVGPVCESGDWI
GRDRALNVVAGDLLAVLSAGAYCMSMASNYNTRGRAAEVLVSGASAKLIRRRETMEDQLR
AEIDG
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaacacccccctgcccggccacccccacatcgcccaccgcgacggcgcgctg
cacgtcgagggcgtcgcactcgacgcgctggcacgcacgcacggcacgccgctgttcgtc
tattcgaagcagtggatgctcgatgccctggccgcctaccagcgcggcttcgaggaccgc
gacgcgctgatctgctacgcgatgaaggccaattcgtcgctcggcgtgctgcgcgtgttc
gccgaggccggctgcggtttcgacatcgtctcgggcggcgagctgtcgcgcgtgctggcg
gtgggcgccgatccgaagaagatcatcttctcgggcgtcggcaagacgcgcgccgagatg
cgccaggccctggcggccggcatcgcctgcttcaacgtcgagagcgaagccgagctcgac
gtgctcaacgaggtggcgctggccgagaaggtgcgcgcaccgatcagcatccgcatcaat
ccgaacgtcgacccgaagacgcatccctatatttccaccggcctcaagggcaacaagttc
ggcatcgcgcacgaccgcgcggtgcaggcctaccagcacgccgcccggctgccgggcctc
gaggtggtcggcatcgactgccacatcggctcgcagatcaccgaagcctcaccctacctg
gacgcctgcgaccgcgtgctcgacctggtggaggccatcgaggcggccggcgtgccgatc
catcacctggacttcggcggcggcctgggcatcgactacaacggcgaagtgccgcccaag
gccgatgcactgtggcagcagctgctcgccaagctcgacgcgcgcggcttcggccagcgc
aagctggtgatcgaacccggccgctcgctggtcggcaatgccggcgtgtgcgtgaccgag
gtgctctacaccaagcccggcgaagacaagaacttctgcatcgtcgacgcggccatgaac
gacctgccgcgccccgcgatgtaccaagccttccagaagatcgtgccgctgcgcgagcgc
gccggcgacgcgccgacctacgacgtggtgggcccggtctgcgaaagcggcgactggatc
ggccgcgaccgtgcgctcaacgtggtggccggcgacctgctggccgtgctgtcggccggt
gcgtactgcatgagcatggccagcaactacaacacgcgcggccgtgcggccgaggtcctg
gtgagcggcgccagcgccaagctgatccgccgccgcgagacgatggaagaccagctgcgc
gccgagatcgacggctga
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