Variovorax boronicumulans: CKY39_09540
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Entry
CKY39_09540 CDS
T05068
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03420
Nucleotide excision repair
vbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKY39_09540
03430 Mismatch repair
CKY39_09540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_09540
Enzymes [BR:
vbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKY39_09540
DNA repair and recombination proteins [BR:
vbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKY39_09540
MMR (mismatch excision repair)
Other MMR factors
CKY39_09540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATA53431
UniProt:
A0A250DH25
LinkDB
All DBs
Position
2100035..2102488
Genome browser
AA seq
817 aa
AA seq
DB search
MLPHDLFSGASAADTGGPASPLLNNLNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIA
WLLQTGQVSAGGILAVTFTNKAAKEMMTRLTAMLPVNVRGMWIGTFHGLCNRLLRAHWKL
ANLPSTFQILDTQDQLSAIKRLMKQFNVDDERFPAKQTQWFIAGAKEDGLRPGDIEARSD
DDRKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDNEPVREHYQRRFRHILVDEFQDT
NRLQYAWLKMLAGHTAAGGHFTPGEHNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVR
RQIVLEQNYRSYSNILDSANELISHNKKRLGKNLRTTQGPGEPVRVYESPTDLAEAQWMV
EEMRQLARDGFDRKEMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAY
LRLLENKDDDTSFLRVVNFPPRGIGARTLESLQDAARAAGRSLHDAVSAVGGKAGSNLTA
FVAKIDVLREQTQGVSLREIIELVLDHSGLVEHYKADREGADRIENLDELVNAAESFVTQ
EGFGRDAVALPVDELRQSPASQGLDPNRPVLDEPLAPDAETGETLSPLAAFLTHAALESG
DNQAQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAI
TRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEGALKWLTPKNQGFAPSAFGYGGGYG
STRGGAGGYGGGGGGGNRYGGGGGSASKDTFASPPVPPQKTAPSHGLRSGMQVFHNKFGE
GTVTALEGTGDDARAQVKFARHGVKWLALSVAKLTPV
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgctccctcacgacctgttttccggcgcgtccgcagccgatacgggcggccctgcctcg
ccgttgctgaacaacctcaacgccgagcagcttgctgccgtcacgctgcccgcgggtaat
gccctcatccttgccggtgccggctccggcaagacgcgggtgctcaccacccgcatcgcc
tggctgctgcagacggggcaggtgtccgccggcggcatcctggccgtcaccttcaccaac
aaggccgccaaggaaatgatgacgcggctgaccgcgatgctgccggtgaacgtgcgcggc
atgtggatcggcaccttccacggcctgtgcaaccgcctgctgcgcgcgcactggaagctg
gccaacctgccttcgaccttccagatcctcgatacgcaggaccagctctcggccatcaag
cgcctgatgaagcagttcaacgtcgacgacgagcgctttccggccaagcagacccagtgg
ttcatcgccggcgccaaggaagacggcctgcgtcccggcgacatcgaggcccgcagcgac
gacgaccgcaagaaggtcgagctctaccagctgtacgaagaacagtgccagcgcgaaggc
gtggtcgacttcggcgagctgatgctgcgcagctacgagctgctgcgcgacaacgagccc
gtgcgcgagcactaccagcggcgcttccgccacatcctggtcgacgagttccaggacacc
aaccgcctgcagtacgcatggctgaagatgctcgcgggccacacggcggccggcggccac
ttcacgccgggcgagcacaacagcgtgatcgccgtgggcgacgacgaccagagcatctac
gccttccgcggcgcgcgcgtgggcaacatgaccgacttcgtgcgcgagttcgacgtgcgc
cgccagatcgtcctggagcagaactaccgcagctacagcaacatcctcgattcggccaac
gagctcatcagccacaacaagaagcgcctgggcaagaacctgcgcacgacccaaggccca
ggcgagcccgtgcgcgtgtacgaatcgcccaccgacctcgccgaggcgcagtggatggtc
gaggaaatgcgccagctggcgcgcgacggcttcgaccgcaaggaaatggccgtgctctac
cgcagcaatgcgcaaagccgggtgattgaaacggcgctgttcaatgcctcggtgccgtac
cgcgtgtacggcggcctgcgcttcttcgagcgcgccgaaatcaagcatgcgctggcctac
ctgcgcctgctcgagaacaaggacgacgacaccagcttcctgcgcgtcgtcaacttcccg
ccgcgcggcatcggcgcacgcacgctcgaaagcctgcaggacgcggcgcgcgccgccggg
cgctcgctgcacgacgcggtgagtgcggtcggcggcaaggctggctcgaacctcacggcc
ttcgtcgccaagatcgacgtgctgcgcgagcagacgcaaggtgtgagcctgcgcgagatc
atcgagctggtgctcgaccacagcggcctcgtcgaacactacaaggccgaccgcgaaggc
gccgaccgcatcgagaacttggacgagctcgtgaacgcggccgaaagcttcgtcacgcag
gaaggcttcggtcgcgacgccgtggcgctgccggtcgacgagctgcgccagtcgcctgcc
agccaggggctcgaccccaaccggccggtgctcgacgagccgctggcacccgatgccgaa
accggcgaaacgctgagcccgctcgcggccttcctgacgcatgcggccctcgagtcgggc
gacaaccaggcgcaggccggccaggacgcggtgcagctcatgaccgtgcacgccgccaag
ggcctggagttcgattgcgtgttcatcaccggcatggaagagggcctgttcccgcacgag
aactcgatgagcgatttcgagagcctcgaggaagaacgccgtctgatgtacgtggcgatc
acgcgcgcacgcaagcgcctgtacctgagccattcgcagacgcgcatgctgcacggccag
acccgctacaacgtcaagagccgcttcttcgacgagctgccggaaggcgcgctcaagtgg
ctcacgccgaagaaccagggctttgcgccctcggccttcggctatggcggcggctacggc
agcacgcgcggcggtgccggtggctacggtggtgggggaggcggcggcaaccgttacggc
ggaggcggtggcagcgcgagcaaggacaccttcgccagcccgcccgtgccgccgcagaag
accgcgccgtcgcacggcctgcgctcaggcatgcaggtgttccacaacaagttcggcgag
ggcacggtgaccgcgctcgaaggcaccggcgacgatgcgcgggcacaggtgaagttcgcg
cgccacggggtgaagtggctggcgctgtcggtggcgaagctcacgccggtctga
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