KEGG   Variovorax boronicumulans: CKY39_09560
Entry
CKY39_09560       CDS       T05068                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vbo  Variovorax boronicumulans
Pathway
vbo03030  DNA replication
vbo03410  Base excision repair
vbo03420  Nucleotide excision repair
vbo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CKY39_09560
   03410 Base excision repair
    CKY39_09560
   03420 Nucleotide excision repair
    CKY39_09560
   03440 Homologous recombination
    CKY39_09560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vbo03032]
    CKY39_09560
   03400 DNA repair and recombination proteins [BR:vbo03400]
    CKY39_09560
Enzymes [BR:vbo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CKY39_09560
DNA replication proteins [BR:vbo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CKY39_09560
DNA repair and recombination proteins [BR:vbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     CKY39_09560
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CKY39_09560
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 HHH_2
Other DBs
NCBI-ProteinID: ATA53435
UniProt: A0A250DGB9
LinkDB
Position
2104980..2107796
AA seq 938 aa
MTDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYA
ACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVITVPEVEADDVI
GTLAKVAAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDIAGVTAEFGVPPSLMVD
YQTLIGDTVDNVPGVPKVGPKTAAKWLLEYGSLDALVERAAEVKGAAGENLRQALDKLPL
SRRLVTIRTDCDLNGHVEGLPSLEGLPVGAPQTAELKPFYEKFGFKSLVKSLEAQEVPPE
LIEENAKKKAASKADRDQGGLFDEPSELEAQEAAAPASNLKYDTVMEWAQFDAWLAKLEA
AELTAIDTETTSLDEMVAQIVGISFSVTPGEAAYIPLTHNYPDAPAQLPIDEVLARLKPW
LENADKKKLGQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLEVNKPHGLSSLAERHLGRS
GISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHRTLWPLLQKEEKLAYIYQLE
MDSSEALYRIERNGVLIDAPTLAAQSHDLGTRIMALEQEAYDIAGQPFNLGSPKQIGEIF
FTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKLGQLANP
RTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIE
LRIMAHISGDESLLRAFTDGVDVHRATAAEVFGTTPDQVSSEQRRYAKVINFGLIYGMSS
FGLAKNLGIETKAAASYIDRYFARYPGVKTYMDQIVEFARDKGYVETVFGRRLYLSEING
GNGPRKKAAERQAINAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPE
AEVEWVRTEIPRLMAGVAALKVPLLAEIGVGPNWDKAH
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgaccgacaagaaaacgctgctgctcgtcgatggctcgagctacctgtaccgggccttc
cacgcgatgcccgatctgcgcgccgtgcccggcgacccgaagagcccggccaccggggcg
atccggggcatgatcaacatgatgaccgcgctgcgccgcgaggtgcgcgccgactacgcg
gcctgcatcttcgacgcccccggcaagaccttccgcgacgactggtaccccgagtacaag
gccaaccgctcgccgatgcccgacgacctgcgcagccagatcgaccccatccacgaagtg
gtcaagctgctcggctggccggtgatcaccgtgcccgaggtcgaggccgacgacgtgatc
ggcacgctcgccaaggtggcggccgcgcagggcgtcgaagtgatcgtgtccagcggcgac
aaggacctgagccagctggtcgacgagcacatcaccatcatcgacacgatgaacggcaag
aagcgcgacatcgccggcgtgacggccgagttcggcgtgccgcccagcctcatggtcgac
taccagacgctcatcggcgacacggtcgacaacgtgcccggcgtgccgaaggtcggcccc
aagacggctgcgaaatggctgctcgaatacggctcgctcgatgcgctggtcgaacgcgcg
gccgaagtgaagggcgccgccggcgagaacctgcgccaggcgctcgacaagctgccgctg
agccgccgcctcgtcaccatccgcaccgactgcgacctgaacggccatgtcgaaggcctg
ccctcgctcgaaggcctgcccgtcggcgcgccgcagacggccgagctgaagcccttctac
gagaagttcggtttcaagagcctcgtcaagtcgctcgaagcgcaggaagtgccgcccgag
ctgatcgaagagaacgcgaagaagaaggctgcctccaaggccgaccgcgaccagggcggc
ctgttcgacgagccttccgagctggaggcgcaagaggccgccgcgcccgcgagcaacctc
aagtacgacacggtcatggagtgggcgcagttcgacgcctggctcgccaaactcgaggcc
gccgaactcacggccatcgacaccgagaccacctcgctcgacgaaatggtcgcgcagatc
gtgggcatcagcttcagcgtcacgccgggcgaagcggcctacattccgctcacgcacaac
taccccgacgcgcccgcgcagctgcccatcgacgaggtgctcgccaggctcaagccctgg
ctcgagaacgccgacaagaaaaagctcggccagcacatcaagtacgaccgccacgtgttc
gccaaccacggcatcgaggtgcagggctacgcacacgacaccatgctgcaaagctacgtg
ctcgaagtgaacaagccgcatggcctgtcgtccctggccgagcgccatctggggcgcagc
ggcatttcctatgaagacctgtgcggcaagggcgcgcaccagattccgttcagccaggtc
gacatcgccaaggccgccgagtactcgtgcgaagacagcgaccagacgctcgacgtgcat
cgcacgctctggcccctgctgcagaaggaagaaaagctggcctacatctaccagctcgaa
atggattcgagcgaggcgctgtaccgcatcgaacgcaacggcgtgctgatcgacgcgccc
acgctggccgcgcagagccacgacctgggcacgcgcatcatggcgctggagcaggaggcc
tacgacatcgcgggccagcccttcaacctcggttcgcccaagcagatcggcgagatcttc
ttcaccaagctgggcttgcccgtggtcaagaagacgccgagcggcgcgcccagcaccgac
gaagaagtgctggagaagctggccgaagactatccgctgcccgccaagatcctcgagcac
cgtggcctctcgaagctcaagggcacctacaccgacaagctcggtcagctggccaacccg
cgcaccggccgcgtgcacacgcactacgcgcaggcggtggccgtcacgggccgcctgagc
agcaacgaccccaacctgcagaacatcccgatccgcacgcccgaaggccggcgcgtgcgc
gaggccttcgtggcaccggcaggcagcgtgatcgcgagcgccgactactcgcagatcgag
ctgcgcatcatggcccacatcagcggcgacgagtcgctgctgcgcgccttcaccgacggc
gtcgacgtgcatcgcgccacggccgccgaggtgttcggcaccacgccagaccaggtgtcg
agcgagcagcgccgctacgccaaggtcatcaacttcggcctcatctacggcatgagcagc
ttcggcctggcgaagaacctgggcatcgagaccaaggccgcggcctcgtacatcgatcgc
tactttgcgcgctacccgggcgtgaagacctacatggaccagatcgtggagttcgcgcgc
gacaagggctatgtcgagaccgtgttcggccggcgcctctacctgagcgagatcaacggc
ggcaacggcccccgcaagaaggcggccgagcgccaggccatcaacgcgccgatgcagggc
acggcggccgacctcatcaagctcagcatggtcaaggtacagaacgtgcttgacgaagaa
aagcgcgccaccaagatgatcatgcaggtgcacgacgaactggtgttcgaagtgcccgag
gccgaggtcgaatgggtgcgcaccgaaatcccgcgcctgatggccggcgtggcggcgctc
aaggtgccgctgctcgccgagatcggcgtcggtcccaactgggacaaggcccactga

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