Variovorax boronicumulans: CKY39_15170
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Entry
CKY39_15170 CDS
T05068
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo00260
Glycine, serine and threonine metabolism
vbo00460
Cyanoamino acid metabolism
vbo00630
Glyoxylate and dicarboxylate metabolism
vbo00670
One carbon pool by folate
vbo00680
Methane metabolism
vbo01100
Metabolic pathways
vbo01110
Biosynthesis of secondary metabolites
vbo01120
Microbial metabolism in diverse environments
vbo01200
Carbon metabolism
vbo01230
Biosynthesis of amino acids
vbo01240
Biosynthesis of cofactors
vbo04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
CKY39_15170 (glyA)
09102 Energy metabolism
00680 Methane metabolism
CKY39_15170 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
CKY39_15170 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
CKY39_15170 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
CKY39_15170 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
CKY39_15170 (glyA)
Enzymes [BR:
vbo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
CKY39_15170 (glyA)
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Motif
Pfam:
SHMT
Aminotran_1_2
Aminotran_5
Cys_Met_Meta_PP
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
ATA54411
UniProt:
A0A250DJV5
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All DBs
Position
complement(3310796..3312040)
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AA seq
414 aa
AA seq
DB search
MYQRNILVEQTDPEIWAAIQAENARQEHHIELIASENYASPAVMAAQGSQLTNKYAEGYP
GKRYYGGCEHVDVAEQLAIDRVKQIFGADAANVQPHCGASANEAVMLAFLKPGDTIMGMS
LAEGGHLTHGMPLNMSGKWFNVVSYGLDANEAIDYDAMERKAHEHMPKLIIAGASAYSLH
IDFERFAKVAKDVGAIFMVDIAHYAGLVAAGVYPNPVPHADIVTSTTHKSLRGPRGGIIL
MKSQHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALAPEFKAYQQQVVKNAQIVADTLT
ARGLRIVSGRTESHVMLVDLRSKGITGKEAEAVLGAAHMTINKNAIPNDPEKPMVTSGVR
IGTPAMTTRGFKDEEARITANLVADVLENPRDAANIDAVRAKVHALTSRFPVYR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaacgcaatatcctggtcgaacagaccgatcccgaaatctgggccgccattcaa
gccgaaaacgcgcgccaggaacatcacatcgagctgatcgccagcgagaactacgcctcg
ccggccgtcatggccgcccagggctcgcagctcactaataaatacgccgaaggctaccca
ggcaagcgctactacggcggctgcgagcacgtcgacgtggccgagcaactggccatcgac
cgcgtcaagcagatcttcggtgccgacgccgcgaacgtgcagccgcactgcggcgcctcg
gccaacgaagccgtgatgctcgccttcctgaagcccggcgacaccatcatgggcatgagc
ctggccgaaggcggccacctgacccacggcatgccgctgaacatgagcggcaagtggttc
aacgtggtgagctatggcctggacgccaacgaagccatcgactacgacgcaatggaacgc
aaggcgcatgagcacatgcccaagctgatcatcgcgggcgcctcggcctactcgctgcac
atcgacttcgagcgtttcgccaaggtcgccaaggacgtcggcgcgatcttcatggtcgac
atcgcccactacgccggcctcgtggccgcgggcgtgtaccccaacccggtgccgcacgcc
gacatcgtgacctcaaccacgcacaagagcctgcgcggcccgcgcggcggcatcatcctg
atgaagtcgcagcacgagaaggcgatcaacagcgccatcttccccggcctgcaaggcggc
ccgctgatgcacgtgattgccgccaaggccgtcgcgttcaaggaagccctggcgcccgag
ttcaaggcctaccagcaacaggtggtcaagaacgcccagatcgtggccgacaccctcacc
gcgcgcggcctgcgcatcgtgagcggacgcaccgaaagccacgtcatgctggtggacctg
cgttccaagggcatcaccggcaaggaagccgaagccgtgctgggcgccgcccacatgacg
atcaacaagaacgcgatccccaacgacccggaaaagccgatggtcaccagcggcgtgcgc
atcggcacccccgccatgaccacgcgcggcttcaaggacgaagaggcccgcatcacggca
aacctggtggccgacgtgctcgagaacccgcgcgatgcggcgaacatcgacgcagtgcgc
gccaaggtccacgccttgacgagccgcttccctgtctaccgttga
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