Variovorax boronicumulans: CKY39_15965
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Entry
CKY39_15965 CDS
T05068
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKY39_15965 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_15965 (mfd)
Enzymes [BR:
vbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKY39_15965 (mfd)
DNA repair and recombination proteins [BR:
vbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CKY39_15965 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
IstB_IS21
HemY_N
Motif
Other DBs
NCBI-ProteinID:
ATA54538
UniProt:
A0A250DJJ1
LinkDB
All DBs
Position
complement(3470933..3474415)
Genome browser
AA seq
1160 aa
AA seq
DB search
MDLPLLPAGKRFTLPRPPLSADALMLAQLGMREKAAGRATAMFTADANDAQRLIDEIAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPA
FLAGYTFQFKAKQKLQESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFR
VDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARARFRSRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNER
YRLVQGDPERPALPPDALFLNAEQFYQRAKPHAQLAIRGDIATDAPYAEFDKLPPFAVVR
GAEDPLVGLKAHIAATPHRVLLIAESDGRRESLLDFLRASGVNPPAFDSLAEFEASGDEK
IGIATAALASGFAWREQAIDFVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVG
DPVVHSAHGIGRYRGLIHMDLGQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRY
TGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPADYEV
FANDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQV
AFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHK
LLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRD
LSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEI
LPEARIAVAHGQMPERELERVMRDFVAQRYNMLLCSTIIETGIDVPTANTIVMSRADKFG
LAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQASQRLEAIQQMEELGSGFYLAMHDLEI
RGTGEVLGENQSGNMMEIGFQLYNEMLSEAVRSLKAGQEPDLLSPLSVTTEINLHAPALL
PDDYCGDVHLRLSFYKKLATAKNPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARP
YGVVKVDAAPGIINITFRKDAPVDGMAIIQLIQKNKHIKLAGNEKLRIERELKEPKDRAQ
MVRDVLRSLGQPLVKETAPA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggacctcccccttctcccggcgggcaagcgtttcacgctgccgcgtcccccgttgtcc
gccgatgcgctgatgctggcccagctcggcatgcgcgagaaggccgcgggtcgcgccacc
gcgatgttcaccgccgacgcgaacgacgcccagcggctcatcgacgaaatcgccttcttc
gcccccgagctgcgctgcgccctcttccccgactgggaaacgctgccctacgacagcttc
tcgccgcaccaggacctgatcagcgagcgcctggccacgctgtggcgcatcagccagaaa
gaggccgacgtggtgctggtgcccgccaccaccgcgctgtaccggctggcgccgcccgcc
ttcctggccggctacaccttccagttcaaggccaagcagaagctgcaggagtccaagctc
aaggcgcagctcacgctggccggctacagccacgtcacgcaggtggtgagcccgggcgag
tacgcggtgcgcggcggcctgatcgacctgttcccgatgggctcgccggtgccttttcgc
gtcgacctgttcgacgacgagatcgactccatccgcaccttcgaccccgatacccagcgc
agcctgtatcccgtgcccgaagtgcgcctgctgccgggccgcgagttcccgatggacgac
gacgcccgcgcgcgctttcgcagccgctggcgcgaactgctcgagggcgacccgaccaag
agccgcatctacaaggacatgggcaacggcgtggccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagacggccacggtgttcgactacctcggccccgacgccaccgtc
gtgctgcacggcgacctggaacccgcgttccagcacttctggcaggacaccaacgagcgc
taccgcctggtgcagggcgaccccgagcgccccgcgctcccgcccgacgcgctgttcctc
aacgccgagcagttctaccagcgcgccaagccgcatgcgcagctcgccatccgcggcgac
atcgccaccgacgcgccctacgcagagttcgacaagctgccgccgttcgctgtggtgcgc
ggcgcggaagacccgctggtcggcctgaaggcccacatcgccgccacgccgcaccgcgtg
ctgctgatcgccgagagcgacgggcgccgcgagagcctgctcgacttcctgcgcgccagc
ggcgtgaacccgccggccttcgactcgctggccgagttcgaagcctcgggcgacgagaag
atcggcatcgccaccgccgcgctggcctcgggcttcgcgtggcgcgaacaggcgatcgac
ttcgtcaccgagaccgagctgttcgccaccgcgcccaccacgcgtcggcgcaacaagaag
caggaacaggtcagcgacgtcgaagcgctgatcaaggacctgtccgaactcaacgtgggc
gaccccgtggtccacagcgcgcacggcatcggccgctaccgcggcctgatccacatggac
ctgggccagggcacggacgccgagggcaagccgctgctgcaggaaatgctgcacctggag
tacgccgacaaggccacgctctacgtgcccgtgagccagctgcaccagatcagccgctac
accggcgtgagcgccgacgaggcgccgctgcacaagctgggctccggccaatgggaaaag
gccaagcgcaaggccgccgaacaggtgcgcgactcggccgccgagctgctcaacatctac
gcccgccgcgccgcgcgcgaaggccatgccttccgctactcgccggccgactacgaggtg
ttcgccaacgacttcggcttccaggaaaccgccgaccagaaggccgccatccacgccgtg
gtgcaggatatgatctcgccccagccgatggaccgcctcgtgtgcggcgacgtgggcttc
ggcaagaccgaggtcgcgctgcgcgccgctttcattgccgtcaccggcggcaagcaggtc
gcgtttctcgcgccgaccacgctgctggccgagcagcactaccagacgctggtcgaccgt
tttgccaagtggccggtgaaggtggccgagatgagccgcttccgctcggccaaggagatc
acggccgccgccaagggcctggctgagggccaggtcgacatcgtggtgggcacgcacaag
ctgctctcgcagtcggtcaagttcaagaacctgggcctgctcatcatcgacgaggagcac
cgtttcggcgtgcgccacaaggaggcgatgaaggcgatgcgcgccgaggtcgacgtgctc
acgctcacggccacgccgattccgcgcacgctgggcatggcgctcgaaggcctgcgcgac
ctgagcgtgatcgccaccgcgccgcagcgccgcttggccatcaagaccttcgtgcgcaac
gagggcacgggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcgggcaggtc
tacttcctgcacaacgaggtcgaaaccatcgagaaccggcgccagaagttggaagaaatc
ctgcccgaggcccgcatcgccgtggcccacggccagatgcccgagcgcgagctggagcgc
gtgatgcgcgacttcgtggcccagcgctacaacatgctgctgtgctcgaccatcatcgag
accggcatcgacgtgcccaccgccaacaccatcgtgatgagccgcgccgacaagttcggc
ctggcgcagctgcaccagctgcgtggccgcgtcggccgcagccaccaccaagcctatgcc
tacctcatggtgcccgacaccgagggcctgaccaagcaggcctcgcagcggctcgaggcg
atccagcagatggaagaactgggctcgggcttctacctggcgatgcacgacctggagatc
cgcggcaccggtgaggtgctcggcgagaaccagagcggcaacatgatggagatcggcttc
cagctctacaacgagatgctcagcgaagccgtgcgctcgctgaaggccggacaggagccc
gacctgctctcgccgctgtcggtcacgaccgagatcaacctgcacgccccggccctgctg
cccgacgattactgcggcgacgtacacctgcggctgtcgttctacaagaagctcgccacc
gcgaagaacccggaccagatcgacacgctgctggaagaaatcgtcgaccgcttcggcaag
ctgccgccgcaggcgcagacgctgatcgacacgcaccgcctgcgcgtgctcgcgcggccc
tacggcgtggtcaaggtcgacgcggcgccgggcatcatcaacatcaccttccgcaaggac
gcgccggtggacggcatggccatcatccagctgatccagaagaacaagcacatcaagctc
gccggcaacgagaagctgcgcatcgagcgcgaactcaaggagccgaaggaccgcgcccag
atggtgcgcgacgtgctgcgcagtctcggacaacccctcgtcaaggaaaccgcccccgca
tga
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