Variovorax boronicumulans: CKY39_16775
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Entry
CKY39_16775 CDS
T05068
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CKY39_16775
09124 Replication and repair
03420 Nucleotide excision repair
CKY39_16775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbo03021
]
CKY39_16775
03036 Chromosome and associated proteins [BR:
vbo03036
]
CKY39_16775
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_16775
Enzymes [BR:
vbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CKY39_16775
Transcription machinery [BR:
vbo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CKY39_16775
Chromosome and associated proteins [BR:
vbo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CKY39_16775
DNA repair and recombination proteins [BR:
vbo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CKY39_16775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATA54673
UniProt:
A0A250DL55
LinkDB
All DBs
Position
3626431..3628770
Genome browser
AA seq
779 aa
AA seq
DB search
MPSDLHSAPSAAVSAAHVVSVKALCAFGAKAGDLDLRFVPAPSALEGMAGHALVQARRGG
DYQSEVPLATNCGTLRVRGRADGYDPAQARVEEIKTFRGDFDAIRANHRALHWAQVRCYG
WMLCEQEGLEQLTVALVYLDLASGDETVLEEQHTRDTLRTHFETLCACYSDWAQREAAHR
GALDDALARLEFPHADFRTGQRELAEAVYRAAVGGRCLLAQAPTGIGKTLATLFPLLKAR
AAHKLDKVFFLTAKTSGRPVALDALRVLGQGGAHRPRVLELAAREKVCEYPDRACHGEAC
PLARGFYDRLPAARAEAAQVGWLDREALRRVALAHEVCPYFLAQEMTHWSDVVVGDYNYY
FDGSAFLFASMKDANWRVAVLVDEAHNLLERARGMYTAKLEGAALEEAHRAAPAAVRGPL
ARLFREWDTLQQAQTAGYDTADEIPERFLRTLQAANTAMAEHFAATPDAAQGPLQRFFFD
ALHFARLAEVFDDHSVFERTLGATQEQRGLAIRNLVPGPFLEGRFADAVSVTCFSGTLAP
FAFYRDALGLPEDTALLDVESPFRGQQLRVEVATGVSTRFRDRAGSLRHVTDIIGAQFER
LPGNYLAFFSSFDYLDKACAAFSLRHPGVPVWTQTRGMRETDRHDFVARFEEGGQGIGFA
VLGGAFGEGIDLPGSRLIGAFVASLGLPQYNELNEITRERMQSRFGKGYEYTYLYPGLQK
VVQAAGRVIRTEADTGVLHLLDDRFARAEIRELLPRWWHVQLAGEAGQAGEGDARHPTP
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgacctccattccgctccgtcagccgccgtttcggcggcgcacgtcgtgtcc
gtcaaggccttgtgcgccttcggcgcgaaggcgggcgatctcgacctgcgcttcgtgccc
gcgcccagcgcgctcgaaggcatggccggccacgcgctggtgcaggcccggcgcggcggc
gactaccagagcgaggtgccgctggccaccaactgcggcacgctgcgcgtgcgcggccgg
gccgacggctacgacccggcgcaggcgcgagtggaagaaatcaagaccttccgcggcgac
ttcgacgccatccgcgccaaccaccgcgcgctgcactgggcccaggtgcgctgctacggc
tggatgctctgcgagcaggaagggctcgagcagctgaccgtcgcgctggtctacctcgac
ctggccagcggcgacgagaccgtgctggaagagcagcacacgcgcgacaccctgcgcacg
cacttcgagaccctgtgcgcctgctacagcgactgggcgcagcgcgaggccgcgcaccgc
ggcgcgctcgacgacgcgctggcgcggctggagtttccccacgccgactttcgcaccggc
cagcgcgaactggccgaggcggtctaccgcgccgccgtgggcgggcgctgcctgctggcg
caggcgcccacgggcatcggcaagacgctggccacgctctttccgctgctcaaggcgcgc
gcggcgcacaagctcgacaaggtgttcttcctcaccgccaagacctccggccggcccgtg
gcgctcgacgccttgcgcgtgctggggcagggcggcgcccaccggccgcgcgtgctcgaa
ctcgcggcccgcgagaaggtctgcgagtaccccgaccgcgcctgccacggcgaggcctgc
ccgctggcacgcggcttctacgaccgcctgccggccgcgcgcgccgaggccgcgcaggtg
ggctggctcgaccgcgaggcgctgcggcgggtcgcgctcgcgcacgaggtgtgcccctat
ttcctggcgcaggaaatgacgcactggagcgacgtcgtcgtcggcgactacaactactac
ttcgacggcagcgccttcctcttcgccagcatgaaggacgccaactggcgcgtcgccgtg
ctggtcgacgaggcccacaacctgctggagcgcgcacgcggcatgtacaccgcgaagctc
gaaggcgcggcgctggaagaagcgcaccgcgccgcacccgccgccgtgcgcggcccgctg
gcgcggctgttccgcgaatgggacacgctgcagcaggcgcagaccgccggctacgacacc
gccgacgaaatccccgagcgcttcttgcgcacgctgcaggccgccaacaccgcgatggcc
gagcacttcgccgccacgcccgatgcggcgcaggggccgctgcagcgcttcttcttcgac
gcactgcacttcgcgcggctggccgaggtcttcgacgaccactcggtgttcgagcgcacg
ctgggcgccacgcaggaacagcgcggcctggccatccgcaacctcgtgcccgggcccttc
ctcgaaggccgcttcgccgacgcggtgtcggtcacctgcttctcgggcacgctcgcgccg
ttcgcgttctaccgcgacgcgctcggcctgcctgaagacacggcgctgctcgatgtcgaa
tcgccgtttcgcggccagcagcttcgcgtcgaggtggcgaccggcgtctccacgcgcttt
cgcgaccgcgccggctcgctgcgccatgtgacggacatcatcggcgcgcagttcgaacgc
ctgcccggcaactacctggccttcttcagcagcttcgactacctggacaaggcctgcgcc
gcgttctcgctgcgccaccccggcgtgcccgtgtggacgcagacgcgcggcatgcgcgaa
accgaccgccacgatttcgtggcgcgcttcgaagaaggcgggcagggcatcggcttcgcc
gtgctcggcggcgcgttcggcgaaggcatcgacctgccgggcagccggctcatcggcgcc
ttcgtcgccagcctggggctgccccagtacaacgaactcaacgagatcacgcgcgagcgc
atgcagtcgcgcttcggcaagggctacgagtacacctacctctacccgggcctgcagaag
gtggtacaggccgccggccgcgtgatccgtaccgaggccgacacgggcgtgctgcacctg
ctcgacgaccgctttgcacgcgccgagatccgcgagctgctgccgcgctggtggcatgtg
caactggccggggaggccgggcaggccggagaaggcgatgcgcgccacccgacgccttga
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