Variovorax boronicumulans: CKY39_17860
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Entry
CKY39_17860 CDS
T05068
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
vbo
Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vbo03016
]
CKY39_17860
Enzymes [BR:
vbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
CKY39_17860
Transfer RNA biogenesis [BR:
vbo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
CKY39_17860
BRITE hierarchy
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Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
AKAP7_NLS
TUDOR
Motif
Other DBs
NCBI-ProteinID:
ATA54865
UniProt:
A0A250DKH6
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All DBs
Position
complement(3862095..3862709)
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AA seq
204 aa
AA seq
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MSAQLLLPGIDPPPRPLPRPRGTQAPRKAPLPHSLFFALLPTPQDAETIAALGARMNSQH
ALKGTVVEAQRLHVTLFDLGNHDQVPADKVAQASTAAAAVSVPALDVVFEKSMSYAKGAL
VLCADDEANVAALRAFRQRLGEALADVGLKPSRTFTPHMTVAYARRKLEKHALEAPTRWA
AHSLVLIDSHVGEGVHEVLGRWPA
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctcagcttcttcttcccggaatcgatcccccgccgcggcccctgccgcggccg
cgcggcacccaggcccctcgcaaggcgccgctgccgcactcgcttttctttgcactgctt
cccaccccgcaagacgccgaaaccatcgccgcgctcggcgcacgcatgaactcccaacac
gccctgaagggcacggtggtcgaggcgcagcgcctgcatgtcacgctgttcgacctcggc
aaccacgaccaagtgcccgccgacaaggtggcccaggcatcgaccgcggccgccgcggtg
tccgtgccggcgctcgatgtcgttttcgaaaagtccatgagctacgccaagggcgcgctg
gtgctgtgcgccgacgacgaggccaacgttgcggcgttgcgcgcgttcaggcagcgcctg
ggcgaggcgctggccgacgtcggcctgaagccctcgcgcacgttcacgccgcacatgacc
gtcgcctatgcgcggcgcaagctcgaaaagcacgcgctcgaagcgcccacgcggtgggcc
gcccattcactggtgctcatcgacagccacgtgggcgagggcgtgcacgaggtgctgggc
cgctggcccgcctaa
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