Variovorax boronicumulans: CKY39_18220
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Entry
CKY39_18220 CDS
T05068
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vbo
Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbo03019
]
CKY39_18220 (hrpA)
Enzymes [BR:
vbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CKY39_18220 (hrpA)
Messenger RNA biogenesis [BR:
vbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CKY39_18220 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
NACHT
AAA_19
HA2_N
nSTAND3
T2SSE
AAA_23
SRP54
AAA_30
AAA_25
PhoH
Mei4
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ATA54927
UniProt:
A0A250DKM1
LinkDB
All DBs
Position
complement(3936408..3940331)
Genome browser
AA seq
1307 aa
AA seq
DB search
MTTLTPPAPLRIEFPESLPVSGRREEIMAAIAAHQVVIVCGETGSGKTTQLPKIALALGR
GKLNAEPGKGRLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGFKVRFQDRLSRDASVKL
MTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLREILPRRPDLKVIVTSATI
DADRFAQHFASAKGPAPTIMVSGRTFPVEQRYRPFEESREHDLNDAIADAVDELWRDPHN
AGDILIFLPGEREIREAADHLRRHVSHQPLFRSAEVLPLFARLSGPEQDRIFESHHGRRI
VLATNVAETSLTVPGIRYVIDTGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVA
NGICIRLYDEKDFAGRPRFTDPEILRSSLAGVILRMKSLRLGDVARFPFLEAPSPRAIAD
GYQLLNELGAVDDANELTATGAELAKLPLDPRVGRMILEARTRGALEEVLVIASALSVQD
VRDRPMDAQQQADQAHSKFDDEKSEFSGYLRLWKWIADARGGHGAAPRGRVAPSDASPVM
GAEGPHHKLSNRQYEQLLRQNFINIRRVREWRDIHSQLLTVVTEHKWRINATPAGYEPLH
LSMLAGLLGNVGWKLEDDEAYLGARGIKFYKHPGAHLKKKPGRWIVAAELVETTRLFGRG
IANIEPQWLEQVAEHLLKKQLLDPHWEKKGAQVSALERATLYGLVVYSGRRVDFTKVDPV
SAREIFIREALVGGQWESKFPFLTANRKLVREVEGLEHKARRQDVLVDDELIFAFYDAQL
PPDVASGITFENWYRHASKDQPRLLYLTRDELMRHQAAGITTQSFPPTLRLGGVDCAASY
LHEPGDAKDGLTVSVPLFVLNQVNEERCEWLVTGMLKDKIQALLKSLPQRPRSRLVPLPE
SATKLAEELSAPELFGTGSLTDVLLKRVRDLTSIDVKRADFKLDMLAPHLFMNLRIVDEH
GRQLGMGRNLGALKAELGAQARGAFQALAGLNVKASPAPKAAPANGGQAPAKSAAPEKVA
PTLPAGQRYTTWTFGELPELMEVRRGSQSLIGFPALRDEGDAVTIEVFDEPAVAAAKHRA
GLRRLFALQLKDALKYLEKNIPDLQKMSVAYMPLGTSEELRTQIIDVAIDRAFLQEPLPT
DEFAFKKRLEEGRGRLTLIANEVARLAGVILVEYAAAARKIKDTKVQPEAVQDAAQQLQK
LVGKRFIADAPWTQLQHFARYLKAIVLRLDKLRADPARDTAKLAELRPQEQRYWRLVAER
KGVVDERMLEFRWLLEELRVSFFAQELRTPQPVSVKRLDKAWAQLQA
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaccctgacacctcccgcccccctgcgcatcgagtttcccgaatcgctcccggtc
tccggccggcgcgaggagatcatggccgccattgcggcgcatcaggtcgtgatcgtctgc
ggcgaaacgggctcgggcaagaccacgcagctgccgaagatcgcgctggcgctcgggcgc
ggcaagctcaatgcggagcccggcaagggccgcctcatcggccacacgcagccgcgacgc
attgccgccagctcggtcgccaagcgcatcgccgaagagctgaagacgccgctgggcgac
gtggtcggcttcaaggtgcgctttcaggaccgcctgagccgcgacgcctcggtcaagctg
atgaccgacggcattctgctggccgagacgcagaccgatccgctgctcaaggcctacgac
acgctcatcatcgacgaggcccacgagcgctcgctgaacatcgacttcctgctgggctac
ctgcgcgagatccttccgcgccggcccgacctgaaggtgatcgtcacctcggccaccatc
gatgccgaccgcttcgcgcagcacttcgcttcggccaaggggcccgcgccgacaatcatg
gtgtcggggcgtaccttcccggtcgagcagcgctaccgcccgttcgaggagtcgcgcgag
cacgacctgaacgacgcgatcgcggatgcggtggacgaactctggcgcgacccgcacaac
gccggcgacatcctgatcttcctgcccggcgagcgcgagattcgcgaggcggccgatcac
ctgcgtcgccacgtcagccaccagccgctgttccgcagtgccgaggtgctgccgctgttc
gcgcggctgtcgggccccgagcaggaccgcatcttcgagagccaccacggccggcgcatc
gtgctggccaccaacgtggccgagacctcgctcaccgtgccgggcatccgctacgtgatc
gacaccggcacagcgcgcgtcaagcgttacagcttccgcagcaaggtcgagcagttgctg
gtcgagccgatcagccaggccgcggccaaccagcgcgcgggccgatgcggccgcgtggcg
aacggcatctgcatccgcctgtacgacgagaaagactttgcgggccgtccgcgcttcacc
gacccggaaatcctgcgctcgtcgctcgcgggcgtgatcctgcgcatgaagtcgctgcgg
ctgggcgacgtggcgcgctttccgttcctcgaagcgccgtcgccgcgcgcgattgccgac
ggctaccagctgctgaacgagctgggcgcggtcgacgacgccaacgaactcacggccacc
ggcgccgagctggccaagttgccgctcgatccgcgcgtgggccgcatgatcctcgaagcc
cgcacgcgcggcgcgctggaagaagtgctcgtcatcgcctcggcgctcagcgtgcaggac
gtgcgcgaccgcccgatggacgcacagcagcaggccgaccaggcgcactcgaagttcgac
gacgaaaagagcgagttcagcggctatctgcggctgtggaagtggatcgccgatgcgcgc
ggcggccacggcgccgcgccgcgcggtcgcgtggcgccttctgacgcatcacctgtgatg
ggggccgaaggccctcatcacaagctcagcaaccgccagtacgagcagctgttgcgacag
aacttcatcaacatccgccgcgtgcgcgaatggcgcgacatccattcgcagctgctcacg
gtggtcaccgagcacaagtggcgcatcaacgccacgccggccggctacgagccgctgcac
ctgtcgatgctcgcgggcctgctgggcaacgtgggctggaagctcgaggacgacgaggcc
tacctcggcgcgcgcggcatcaagttctacaagcaccccggcgcgcacctgaagaagaag
cccggccgctggatcgtcgcggccgaactggtcgagaccacgcgcctgttcgggcgcggc
atcgccaacatcgaaccgcagtggctcgaacaggtggcggagcatctgctgaagaagcag
ctgctcgatccgcactgggagaagaagggcgcgcaggtctcggcgctggagcgcgcgacg
ctgtacggccttgtggtctacagcgggcggcgtgtcgatttcaccaaggtcgatccggtg
tcggcgcgcgagatcttcatccgcgaagcgctggtcggcgggcaatgggaaagcaagttc
cccttcctcacggccaaccgcaagctggtgcgcgaggtcgaaggcctggagcacaaggcg
cgccggcaggacgtgctggtcgacgacgaactgatcttcgccttctacgacgcgcaactg
ccgcccgacgtggccagcggcatcaccttcgagaactggtaccgccacgcctcgaaagac
cagccgcgcctgctgtacctcacgcgcgacgagctcatgcgccaccaggcggccggcatc
acgacgcagtcgttcccgcccacgctgcgcctgggcggcgtcgattgcgccgcgagctac
ctgcatgaaccgggcgatgcgaaagacggcctcacggtcagcgtgccgctgttcgtgctc
aaccaggtgaacgaagagcgctgcgagtggctggtgaccggcatgctcaaggacaagatc
caggcgctgctcaagagcctgccgcagcgcccgcgctcgcggctggtgccgctgcccgag
tcggccacgaagctggcggaggagctgtcggcgcccgaactcttcggtaccggctcgctc
accgacgtgctgctcaagcgcgtgcgcgacctcacgagcatcgacgtgaagcgcgccgac
ttcaagctcgacatgctcgcgccgcacctgttcatgaacctgcgcatcgtcgacgagcac
ggccggcagttgggcatgggccgcaacctcggcgcgctgaaggcggagctgggggcgcag
gcgcggggcgcgttccaagcgctcgcggggctcaacgtgaaggcatcgccggcgcccaag
gctgcgcctgcgaacgggggccaggccccggcgaagagcgccgcgcccgagaaggtcgca
cccacgctgcctgccggccagcgctacacgacctggaccttcggcgagctgcccgagctg
atggaggtgcggcgcggttcgcagtcgctcatcggcttcccggcgctgcgcgacgagggc
gacgccgtgaccatcgaggtgttcgacgagcccgccgtggcggccgccaagcaccgcgcc
ggcctgcgccgtctgttcgcgctgcagctgaaggacgcgctgaagtacctcgagaagaac
attcccgacctgcagaagatgtcggtcgcctacatgccgctgggcacgtcggaagaactg
cgcacgcagatcatcgacgtggcgatcgaccgcgccttcctgcaggagccgctgcccacc
gacgagttcgccttcaagaagcggcttgaagaagggcgcgggcggctcacgctgatcgcc
aacgaagtggcgcggctcgcaggcgtcatcctcgtggagtacgcagccgccgcacgcaag
atcaaggacacgaaggtccagcccgaggcggtgcaggacgcggcgcagcagctgcagaag
ctcgtgggcaagcgcttcatcgccgacgcaccgtggacgcagctgcagcacttcgcgcgc
tacctcaaggccatcgtgctgcgcctggacaagctgcgcgccgaccccgcgcgcgacacg
gccaagctggccgagctgaggccgcaggagcagcgctactggcgcctcgtggccgagcgc
aagggcgtggtggacgagcgcatgctcgaattccgctggctgctcgaggagctgcgcgtg
agcttcttcgcgcaggagctgcgcacgccgcaaccggtgagcgtgaagcggctcgacaag
gcctgggcgcagcttcaggcgtaa
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integrated database retrieval system
