Variovorax boronicumulans: CKY39_25355
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Entry
CKY39_25355 CDS
T05068
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKY39_25355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbo03019
]
CKY39_25355
Enzymes [BR:
vbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
CKY39_25355
Messenger RNA biogenesis [BR:
vbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CKY39_25355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ATA56190
UniProt:
A0A250DPC6
LinkDB
All DBs
Position
complement(5484708..5486345)
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AA seq
545 aa
AA seq
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MIKKFIDKLLGKSAGSAQGKSRFGKRQEVPAEVHKIDPALVDERAKNVVTTLQQAGYEAY
VVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFIIGRRFRIVHVVYGRGREHEVIE
VSTFRAYMDSAAAEQVAGNERTSKGELASMKHAVDASGRVLRDNVWGPQEEDAARRDFTV
NAMYYDPANQVVVDYHNGIKDAQKLTLRMIGDPVTRYREDPVRIIRAIRFSAKLAALGFK
MEAKTAAPLIESSKLLADVPQSRMFDEMLKLLQTGHAIATVEQLRKLGLATGIYPLLDVV
VERADQPFVKAALQDTDRRVGEGKPVAPSFLLACVLWADVRDGWAQRQEGRHGQRPQPPF
PALQDAIDDVFNSRIGDVSGRGKLAADMREIWMMQPRFDKRTGSTPYSLVEQARFRAAFD
FMRLRADVGEVGEAIAEWWQEFSTADDLRRQDLLEQVREEQKVRQRVRLRDPAAAPKPRS
EQPARQKQVAAESDDGDGPDIEADAVPPDGEAAAPRKRKRRRKPRPVGGGSGGGGSEGGG
SAAGE
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaattcatcgacaagctgctcggcaagtccgccggcagcgcacagggcaag
agccgcttcggcaagcgccaggaggtgccggcagaggttcacaagatcgatcccgccctg
gtcgacgaacgcgcgaagaacgtggtcaccacgctgcagcaagcgggctacgaggcctac
gtggtgggcggcgcggtgcgcgacctgctgctgggcctgcggccgaaggacttcgacgtg
gccaccaacgccacgcccgagcaggtcaagtcgctgttccgccgcgccttcatcatcggc
cggcgttttcgcatcgtgcacgtggtgtacggccggggccgtgaacacgaagtgatcgag
gtctcgaccttccgcgcctacatggacagcgccgccgccgagcaggtggccggcaacgag
cgcaccagcaagggcgaactggcgagcatgaagcacgccgtggacgccagcggccgcgtg
ctgcgcgacaacgtctggggcccgcaggaagaagacgcggcgcgccgagacttcaccgtc
aacgccatgtactacgacccggccaaccaggtcgtggtcgactatcacaacggcatcaag
gacgcccagaagctcacgctgcgcatgatcggcgacccggtcacgcgctaccgcgaagac
ccggtgcgcatcattcgcgcgatccgtttctcggccaagctggctgcgctcggtttcaag
atggaagccaagaccgccgcgccgctcatcgagtcgagcaagctgctggccgacgtgccg
caaagccgcatgttcgacgagatgctcaagctgctgcagaccggccacgccatcgcgacg
gtggagcagctgcgcaagctggggctcgccaccggcatctatccgctgctcgacgtggtg
gtggagcgcgccgaccagcccttcgtgaaggccgccctgcaggacaccgaccgccgtgtc
ggcgaaggcaagcccgtggcgcccagcttcctgctggcctgcgtgctgtgggccgacgtg
cgcgacggctgggcccagcgccaggaaggccgccatggccagcgcccgcagccgccgttc
ccggcgctgcaggacgcgatcgacgacgtgttcaattcgcgcatcggcgacgtgtcgggc
cgcggcaagctggccgccgacatgcgcgagatctggatgatgcagccgcgcttcgacaag
cgcaccggctccacgccctacagcctggtcgagcaggcgcgcttccgcgccgccttcgac
ttcatgcgcctgcgtgccgacgtgggcgaggtcggcgaggccatcgccgagtggtggcag
gagttcagcaccgccgacgacctgcgccgccaggacctgctcgaacaggtgcgcgaagaa
cagaaggtgcgtcagcgcgtgcgcctgcgcgatccggccgctgcgcccaagccgcgcagc
gagcaaccggcgcgccagaagcaggtcgcagccgagtcggacgacggcgacggccccgac
atcgaggccgacgccgtgccgccggacggcgaagccgccgcgccgcgcaagcgcaagcgc
cggcgcaagccgcgccccgtgggcggcggtagcggtggtggcggcagcgagggcggcggg
agcgctgcaggcgaatga
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