Variovorax boronicumulans: CKY39_25660
Help
Entry
CKY39_25660 CDS
T05068
Name
(GenBank) tRNA pseudouridine(38-40) synthase TruA
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
vbo
Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vbo03016
]
CKY39_25660
Enzymes [BR:
vbo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
CKY39_25660
Transfer RNA biogenesis [BR:
vbo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CKY39_25660
Prokaryotic type
CKY39_25660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Polyketide_cyc2
Motif
Other DBs
NCBI-ProteinID:
ATA56245
UniProt:
A0A250DPF3
LinkDB
All DBs
Position
5562181..5563005
Genome browser
AA seq
274 aa
AA seq
DB search
MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAGLPAGSRVSTLCAGRTDAGVHG
LMQVVHFDTDIERDPFSWMRGTNRYLPDDIAVQWAHPVPDEFHCRASALARRYVYVLSQS
PVRPSLDAGRVGWSMYPLDGDAMRAAAALLVGRHDFSSFRASACQALSPVKDLRRLEITR
VGDGERCRWHFEFEADAFLHHMIRNLMGSLVRIGRGDERPEWITEVLEARSRKVAAPTFS
ADGLYFLGPLYDAKWGLPAEATFQGDRASYDGPP
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
gtgaggctggcactcggcatccgctacaacggccaggcatacgagggctggcagagccag
cgctcgggccgcacggtgcaggacaagctcgaagccgccctcgcaaagttcgccggcctg
cccgccggcagccgggtcagcacgctgtgcgccggccgcaccgacgccggtgtgcacggg
ctgatgcaggtggtgcacttcgacaccgacatcgaacgcgatccgttctcctggatgcgc
ggcaccaaccgctacctgcccgacgacatcgcggtgcagtgggcgcacccggtgcccgac
gaattccattgccgcgccagcgccctggcgcgccgctacgtctacgtgctctcgcagtcg
cccgtgcggcccagcctcgatgcaggccgggtcggctggtcgatgtacccgctcgatggc
gatgcgatgcgcgccgcggcggcgctgctggtgggccggcacgacttcagctcgttccgc
gcctccgcctgccaggccctctcgccggtcaaggacctgcggcgcctcgagatcacgcgc
gtgggcgacggcgagcgctgccgctggcacttcgagttcgaggccgacgccttcctgcac
cacatgatccgcaacctgatgggcagcctggtgcgcatcggccgcggcgacgagcggccc
gaatggatcaccgaggtgctcgaggcgcgcagccgcaaggtggccgcgcccaccttctcc
gccgacggcctgtacttcctcggcccgttgtacgacgccaagtggggtctgccggccgag
gccacgttccagggcgaccgggcttcgtatgatggcccgccatga
DBGET
integrated database retrieval system
