Variovorax boronicumulans: CKY39_27550
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Entry
CKY39_27550 CDS
T05068
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
vbo
Variovorax boronicumulans
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbo03021
]
CKY39_27550 (rpoH)
Transcription machinery [BR:
vbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKY39_27550 (rpoH)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ATA56568
UniProt:
A0A1E7U5D7
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All DBs
Position
5956160..5957101
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AA seq
313 aa
AA seq
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MTTLSGVSANQLAVANPWSMVPPLGNLDAYISAANRLPLLTLEEEQGFARKLRDQNDLEA
AGALILSHLRLVVSISRQYLGYGLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWI
KAEIHEYILKNWRMVKVATTKAQRKLFFNLRSMKQGFKADSAAADNGTHRETLSPDEVSQ
MATRLNVKPEEVLEMETRLSGGDVLLDPGPSDDGDEGFGPIAYLADATQEPTALLESQQR
DRLSSDGIATALEALDDRSRRIVEERWLKVNDDGSGGMTLHDLAAVYGVSAERIRQIEVA
AMKKMKKALAEYA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgctgtctggagtctctgccaaccagctggccgtcgccaacccatggtcgatg
gtccccccgctgggcaacctggatgcctacatttcggccgccaaccgcctgccgctgctc
acgctcgaagaagagcagggcttcgcacgcaagttgcgcgaccagaacgaccttgaagct
gccggtgcgctgatcctgtcgcacctgcgcctggtcgtgtccatttcccgccagtacctg
ggctacgggctgccgcacggcgacctgatccaggaaggcaacgtcggtctcatgaaggcc
gtgaagcgtttcgaccccgaccagggcgtgcggctggtgagctacgccatgcactggatc
aaggccgagatccacgagtacatcctgaagaactggcgcatggtcaaggtcgcgacgacc
aaggcccagcgcaagctgttcttcaatctgcgttcgatgaagcagggtttcaaggccgac
tcggccgcggccgacaacggcacgcaccgcgagacgctgagccccgacgaggtctcgcag
atggccacgcgcctgaacgtgaagcccgaggaagtgctcgagatggaaacccgcctgtcg
ggcggcgacgtgctgctcgatccgggtccgtccgatgacggcgacgaaggcttcggcccc
atcgcctacctggccgacgccacgcaggaaccgaccgccctgctcgaatcgcagcagcgc
gaccgcctgtcgagcgacggcatcgccaccgccctggaggcgctggacgaccgcagccgc
cgcatcgtcgaagagcgctggctcaaggtgaacgacgacggttcgggcggcatgacgctg
cacgacctggccgcggtgtacggcgtgagcgccgagcgcatccgccagatcgaagtggcg
gcgatgaagaagatgaagaaggcgctggccgagtacgcgtaa
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