Variovorax boronicumulans: CKY39_28465
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Entry
CKY39_28465 CDS
T05068
Name
(GenBank) type I secretion system permease/ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vbo
Variovorax boronicumulans
Pathway
vbo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
CKY39_28465
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vbo02000
]
CKY39_28465
02044 Secretion system [BR:
vbo02044
]
CKY39_28465
Transporters [BR:
vbo02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
CKY39_28465
Secretion system [BR:
vbo02044
]
Type I secretion system
Adhesin protein transporter
CKY39_28465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
AAA_29
dNK
G-alpha
ATP-synt_ab
Peptidase_C39
Motif
Other DBs
NCBI-ProteinID:
ATA56719
UniProt:
A0A250DRU3
LinkDB
All DBs
Position
complement(6155807..6157975)
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AA seq
722 aa
AA seq
DB search
MAMVAEERDTLLRAVHWLCAHHGRTLSEAALQAGLPREMRLSPTLAVRILEQAGIGAGWV
KREVGDLLSYLFPVVALRKEGGACVITGRNGQGDKATYDVILPEAGTGTVTLNVQEMAAL
YGGHALLAKPHAQLDDRAGPEAEESEGHWLFSTLWRYRRYYASAALAALLINILTLASTF
FTMNVYDRVVPNQAYVTLWSLAIGVVFAMVFEFSARHVRSHLVDMAGKKADLILGSMLFR
KLLSTRMEHKPQSSGSSANQLREFESVRDFVTSATISTLSDLPFCLLFVGIIFMIGGPLA
LVPLLSIPLIILISVAIQWPLAKVMQENLREGSLKQGLLIESIEGIESLKAARGEGVMQQ
KWENFSALAATSSMKSRKLSSMAVNLVTLIQQVQTVVLVVWGVYLIHAGEFTMGALFGTV
ILAGRSTSPLAAVVGLAVRYQQAKTALTSLNQVMAKPADRVAERRYLAKPVFNGHVTLKK
INFAYPAPPMQPAPPVLQDVSLAIKAGERIAILGNIGCGKSTLLRVMAAMYQPGAGQVLL
DGVDVGQIDPADVRAAVGLLSQDARLFHGTLRDNVTIGHPSATTEEFLHVARITGIDAIA
ARHPRGYDMPIGEGGHGLSGGQRQLVALARCLLLRPRILLMDEPTSSMDLQTEHEFLRRM
AHVTQGQTLVVATHRLSVLDLVDRIVVMDGDGKVFLDGPKDAVLARLRGAAGNEPNEQPV
PA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggtggcggaagagcgcgacacgctgctgcgcgccgtgcactggctgtgcgcg
caccacggccgcacgctgagtgaggccgcgctgcaggcgggcctgccgcgcgagatgcgc
ctgtcgcccacgctggcggtgcgcatcctggagcaggcgggcatcggcgcgggctgggtc
aagcgcgaggtgggcgacctgctctcgtacctgttccccgtggtggcgctgcgcaaggaa
ggcggcgcgtgtgtgatcaccggccgcaacggccagggcgacaaggccacctacgacgtg
atcctgccggaagccggcacgggcacggtgacgctcaacgtgcaggagatggccgcgctg
tacggcggccacgcgctgctggccaagccgcacgcgcagctggacgaccgcgccggcccc
gaggccgaggagtcggaagggcactggctcttttccacgctgtggcgctaccggcgctac
tacgcgagcgcggcgctggcggcgctgctcatcaacatcctcacgctggcgagcaccttc
ttcacgatgaacgtgtacgaccgcgtggtgcccaaccaggcctacgtgacgctgtggtcg
ctggccatcggcgtggtgttcgcgatggtgttcgagttcagcgcgcgccacgtgcgctcg
cacctggtggacatggcgggcaagaaggccgacctgatcctgggctcgatgctgtttcgc
aagctgctgtccacgcgcatggagcacaagccgcagtcgtcgggctcgtcggccaaccag
ctgcgcgagttcgagtcggtgcgcgacttcgtgacctcggccacgatctcgacgctgtcc
gacctgccgttctgcctgctgttcgtgggcatcatcttcatgatcggcgggccgctggcg
ctggtgccgctgctgtcgattccgctcatcatcctcatcagcgtggccatccagtggccg
ctggccaaggtgatgcaggagaacctgcgcgagggttcgctcaagcagggcctgctcatc
gaatcgatcgaaggcatcgagtcgctcaaggccgcgcgcggcgagggcgtgatgcagcag
aagtgggaaaacttcagcgcgctcgcggccaccagttcgatgaagtcgcgcaagctctcg
agcatggcggtgaacctcgtcacgctgatccagcaggtgcagaccgtggtgctggtggtg
tggggcgtttacctcatccatgcgggcgagttcacgatgggcgcgctgttcggcacggtg
atcctggccgggcgctcgacctcgccgctggcggcggtggtgggcctggcggtgcgctac
cagcaggccaagacggcgctgacctcgctcaaccaggtgatggccaagccggccgaccgc
gtggcggagcgccgctacctggccaagccggtgttcaacggccacgtcacgctcaagaag
atcaactttgcctaccccgcgccgcccatgcagccggcaccgccggtgctgcaggacgtg
agcctggcgatcaaggcgggcgaacgcatcgccatcctgggcaatatcggttgcggcaag
tcgacgctgctgcgcgtgatggccgcgatgtaccagcccggcgccgggcaggtgctgctc
gacggcgtcgacgtgggccagatcgacccggccgacgtgcgcgccgccgtgggcctgctg
agccaggacgcgcgcctgttccacggcacgctgcgcgacaacgtgaccatcggccacccc
tcggccaccacggaagagtttctgcacgtggcgcgcatcaccggcatcgacgcgattgcg
gcgcgccatccgcgcggctacgacatgcccatcggcgagggcggccacggcctgtcgggt
gggcagcgccagctggtggcgctcgcgcgctgcctgctgctgcgcccgcgcatcctgctg
atggacgagcccaccagctcgatggacctgcagaccgagcacgaattcctgcgccgcatg
gcgcacgtcacgcagggccagaccctggtcgtggccacgcaccggctgtcggtgctcgac
ctggtcgatcgcatcgtcgtgatggacggcgacggcaaggtgtttctcgacggaccgaaa
gacgccgtgctggcgcgcctgcgcggcgcggccggcaatgaaccgaacgaacaaccggtg
cccgcgtga
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