Variovorax boronicumulans: CKY39_29360
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Entry
CKY39_29360 CDS
T05068
Name
(GenBank) phosphomethylpyrimidine synthase ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo00730
Thiamine metabolism
vbo01100
Metabolic pathways
vbo01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
CKY39_29360
Enzymes [BR:
vbo01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
CKY39_29360
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ATA56875
UniProt:
A0A250DR80
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All DBs
Position
complement(6366993..6368876)
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AA seq
627 aa
AA seq
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MNAPDKFTSLLSLTREPFPASHKCVIPGSRPDLFVPVRDVALTNGETVSLYDTSGPYTDP
KVEIDVRRGLPDVRSAWVIERGDTESYEGRTHHALDDGAKNEDRDAQRLAELRAGASALQ
RTPRRAKSGANVTQMHYARRGIVTPEMEYVALRENGKREWMAEYLANEERAKRVAGNPMG
ASIPRIITPEFVRDEVARGRAIIPANINHPEVEPMAIGRNFKVKINANIGNSAVTSSIEE
EVEKLVWAIRWGADNVMDLSTGKNIHTTRDWIVRNSPVPIGTVPIYQALEKVGGVAEDLT
WEIYRDTLIEQAEQGVDYFTIHAGLRLPFIHLTADRMTGIVSRGGSIMAKWCIAHHKESF
LYTHFEDICDIMKAYDVSFSLGDGLRPGSGADANDEAQFAELRTLGELTQIAWKHDVQTM
IEGPGHVPMHMIQANMDEQIKHCHEAPFYTLGPLTIDIAPGYDHISSAIGAAMIGWAGTA
MLCYVTPKEHLGLPDRDDVKQGIIAYKIAAHAADVAKGHPGARSRDDALSKARFEFRWQD
QFNLGLDPDTAREFHDETLPKDSSKVAHFCSMCGPKFCSMKITQEVREYAAKKGVAEREA
MAEGMEEKSKEFMAGGGEIYIPIRPVV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcccccgacaagttcacctcgctgctgtcgctgacgcgcgaaccctttcccgcc
tcgcacaagtgcgtcattccgggcagccggcccgacctgttcgtgcccgtgcgcgacgtg
gcgctgaccaacggcgaaaccgtctccctgtacgacacctcgggcccctacaccgacccg
aaggtcgagatcgacgtgcgccgtggcctgcccgacgtgcgcagcgcctgggtcatcgag
cgcggcgacaccgaaagctacgaaggccgcacgcaccacgcgctggacgacggcgcgaag
aacgaagaccgcgacgcgcagcgactggccgagctgcgcgccggtgcctcggcgctgcag
cgcacgccgcgccgcgccaagtcgggcgccaacgtcacccagatgcactacgcgcgccgc
ggcatcgtcacgcccgaaatggaatacgtggcgctgcgcgagaacggcaagcgcgagtgg
atggccgagtacctggccaacgaggagcgcgccaagcgcgtggcgggcaacccgatgggc
gcgagcattccgcgcatcatcacgcccgagttcgtgcgcgacgaagtggcccgtggccgc
gcgatcattcccgcgaacatcaaccaccccgaggtcgagccgatggccatcgggcgcaac
ttcaaggtgaagatcaacgccaacatcggcaactcggccgtcacctcgagcatcgaggaa
gaggtcgagaagctggtgtgggccatccgctggggcgccgacaacgtgatggacctgtcg
accggcaagaacatccacaccacgcgcgactggatcgtgcgcaactcgccggtgcccatc
ggcacggtgccgatctaccaggcgctcgaaaaggtgggcggcgtggccgaagacctgacc
tgggagatctaccgcgacacgctcatcgagcaggcggagcagggcgtcgactacttcacc
atccacgcgggcctgcgcctgccgttcattcacctcacggccgaccgcatgacgggcatc
gtgtcgcgcggcggctcgatcatggccaagtggtgcatcgcgcaccacaaggagagcttc
ctctacacgcacttcgaggacatctgcgacatcatgaaggcctacgacgtgagcttctcg
ctcggcgacggcctgcgccccggctcgggtgccgacgcgaacgacgaggcccagttcgcc
gaactgcgcacgctgggtgagctcacgcagatcgcctggaagcacgacgtgcagaccatg
atcgaaggcccgggccacgtgccgatgcatatgatccaggccaacatggacgagcagatc
aagcactgccacgaggcgccgttctacacgctcggcccgctgaccatcgacatcgcaccg
ggctacgaccacatctccagcgccatcggcgccgccatgatcggctgggccggcacggcg
atgctctgctacgtgacgcccaaggagcacctgggcctgcccgaccgcgacgacgtgaag
caggggatcattgcctacaagatcgccgcgcacgcggccgacgtggccaagggccacccg
ggtgcgcgctcgcgcgacgacgcgctgagcaaggcacgcttcgagttccgttggcaagac
cagttcaacctgggcctggaccccgacacggcgcgcgaattccacgacgagacgctgccg
aaggattcgagcaaggtggcgcacttctgctcgatgtgcggccccaagttctgctcgatg
aagatcacgcaggaagtgcgcgagtacgcggccaagaagggcgtggcggagcgtgaggcc
atggccgagggcatggaagagaagtcgaaagaattcatggccggcggcggcgagatctac
attccgatccgccccgtggtttga
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